KRT8P44 (keratin 8 pseudogene 44) - Rat Genome Database

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Gene: KRT8P44 (keratin 8 pseudogene 44) Homo sapiens
Analyze
Symbol: KRT8P44
Name: keratin 8 pseudogene 44
RGD ID: 5130836
HGNC Page HGNC:39878
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: KRT8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386162,568,303 - 162,569,966 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6162,568,379 - 162,569,728 (+)EnsemblGRCh38hg38GRCh38
GRCh376162,989,335 - 162,990,998 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366162,909,401 - 162,910,750 (+)NCBINCBI36Build 36hg18NCBI36
Celera6163,718,961 - 163,720,618 (+)NCBICelera
Cytogenetic Map6q26NCBI
HuRef6160,441,640 - 160,443,297 (+)NCBIHuRef
CHM1_16163,251,552 - 163,253,215 (+)NCBICHM1_1
T2T-CHM13v2.06163,931,425 - 163,933,082 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:408
Count of miRNA genes:364
Interacting mature miRNAs:395
Transcripts:ENST00000441609
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
221 363 561 311 997 246 240 1 52 160 22 567 846 867 3 679 92 483 191 30

Sequence


Ensembl Acc Id: ENST00000441609
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6162,568,379 - 162,569,728 (+)Ensembl
RefSeq Acc Id: XM_001719102
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 366162,909,401 - 162,910,750 (+)NCBI Archive
Protein Sequences
GenBank Protein EAW47576 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
COSMIC KRT8P44 COSMIC
Ensembl Genes ENSG00000227913 Ensembl, ENTREZGENE
GTEx ENSG00000227913 GTEx
HGNC ID HGNC:39878 ENTREZGENE
Human Proteome Map KRT8P44 Human Proteome Map
NCBI Gene 100129958 ENTREZGENE