SMARCE1P1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 1) - Rat Genome Database

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Gene: SMARCE1P1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 1) Homo sapiens
Analyze
Symbol: SMARCE1P1
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 1
RGD ID: 5129382
HGNC Page HGNC:39731
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: SMARCE1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811107,403,338 - 107,404,628 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11107,403,404 - 107,404,589 (-)EnsemblGRCh38hg38GRCh38
GRCh3711107,274,064 - 107,275,354 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera11104,428,958 - 104,430,225 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11103,199,421 - 103,200,688 (-)NCBIHuRef
CHM1_111107,157,161 - 107,158,428 (-)NCBICHM1_1
T2T-CHM13v2.011107,410,493 - 107,411,783 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:38
Interacting mature miRNAs:38
Transcripts:ENST00000417747
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 13 43 33 2 94 2 50 10 38 6 72 46 16 32
Below cutoff 987 1287 888 302 701 202 2152 811 2161 166 893 778 102 627 1334 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000417747
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11107,403,404 - 107,404,589 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SMARCE1P1 COSMIC
Ensembl Genes ENSG00000225215 Ensembl, ENTREZGENE
GTEx ENSG00000225215 GTEx
HGNC ID HGNC:39731 ENTREZGENE
Human Proteome Map SMARCE1P1 Human Proteome Map
NCBI Gene 100271884 ENTREZGENE