THAP12P8 (THAP domain containing 12 pseudogene 8) - Rat Genome Database

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Gene: THAP12P8 (THAP domain containing 12 pseudogene 8) Homo sapiens
Analyze
Symbol: THAP12P8
Name: THAP domain containing 12 pseudogene 8
RGD ID: 5129006
HGNC Page HGNC:39572
Description: INTERACTS WITH sodium arsenite
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: PRKRIRP8
Related Functional Gene: THAP12  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381240,769,121 - 240,771,541 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1240,769,420 - 240,771,534 (-)EnsemblGRCh38hg38GRCh38
GRCh371240,932,421 - 240,934,841 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361238,999,341 - 239,002,966 (-)NCBINCBI36Build 36hg18NCBI36
Celera1214,189,390 - 214,191,503 (-)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1211,390,671 - 211,392,784 (-)NCBIHuRef
CHM1_11242,205,043 - 242,207,156 (-)NCBICHM1_1
T2T-CHM13v2.01240,180,515 - 240,182,935 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Variants

.
Variants in THAP12P8
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:102
Interacting mature miRNAs:102
Transcripts:ENST00000447914
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407219462GWAS868438_Hgut microbiome measurement QTL GWAS868438 (human)0.000005gut microbiome measurement1240770934240770935Human
406944343GWAS593319_Hpyruvate measurement QTL GWAS593319 (human)2e-08pyruvate measurementblood pyruvate level (CMO:0002422)1240770595240770596Human
407219471GWAS868447_Hgut microbiome measurement QTL GWAS868447 (human)0.000003gut microbiome measurement1240770934240770935Human
407219753GWAS868729_Hgut microbiome measurement QTL GWAS868729 (human)0.000001gut microbiome measurement1240770934240770935Human

Markers in Region
G29229  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,938,877 - 240,939,003UniSTSGRCh37
Build 361239,005,500 - 239,005,626RGDNCBI36
Celera1214,195,546 - 214,195,672RGD
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map1q43UniSTS
HuRef1211,396,827 - 211,396,953UniSTS
RGS7_1815  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,938,775 - 240,939,472UniSTSGRCh37
Build 361239,005,398 - 239,006,095RGDNCBI36
Celera1214,195,444 - 214,196,141RGD
HuRef1211,396,725 - 211,397,422UniSTS
SHGC-32119  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,938,895 - 240,939,021UniSTSGRCh37
Build 361239,005,518 - 239,005,644RGDNCBI36
Celera1214,195,564 - 214,195,690RGD
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map1q43UniSTS
HuRef1211,396,845 - 211,396,971UniSTS
TNG Radiation Hybrid Map1121857.0UniSTS
GeneMap99-GB4 RH Map1747.7UniSTS
GeneMap99-GB4 RH Map1746.02UniSTS
Whitehead-RH Map1918.1UniSTS
NCBI RH Map12013.3UniSTS
G34863  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371240,939,016 - 240,939,165UniSTSGRCh37
Build 361239,005,639 - 239,005,788RGDNCBI36
Celera1214,195,685 - 214,195,834RGD
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map1q43UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
72 562 466 152 2882 575 372 83 274 72 231 1009 754 6 2835 153 891 243 18

Sequence


Ensembl Acc Id: ENST00000447914
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1240,769,420 - 240,771,534 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC THAP12P8 COSMIC
Ensembl Genes ENSG00000223963 Ensembl, ENTREZGENE
GTEx ENSG00000223963 GTEx
HGNC ID HGNC:39572 ENTREZGENE
Human Proteome Map THAP12P8 Human Proteome Map
NCBI Gene 645939 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-16 THAP12P8  THAP domain containing 12 pseudogene 8  PRKRIRP8  protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 8  Symbol and/or name change 5135510 APPROVED