PHB1P13 (PHB1 pseudogene 13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: PHB1P13 (PHB1 pseudogene 13) Homo sapiens
Analyze
Symbol: PHB1P13
Name: PHB1 pseudogene 13
RGD ID: 4889298
HGNC Page HGNC:39292
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: PHBP13; prohibitin pseudogene 13
Related Functional Gene: PHB1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381335,250,994 - 35,252,033 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1335,251,070 - 35,251,829 (+)EnsemblGRCh38hg38GRCh38
GRCh371335,825,131 - 35,826,170 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1316,892,054 - 16,892,824 (+)NCBICelera
Cytogenetic Map13q13.3NCBI
HuRef1316,637,911 - 16,638,681 (+)NCBIHuRef
CHM1_11335,792,759 - 35,793,529 (+)NCBICHM1_1
T2T-CHM13v2.01334,469,338 - 34,470,377 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:243
Count of miRNA genes:232
Interacting mature miRNAs:241
Transcripts:ENST00000453244
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 170 73 185 15 243 5 141 59 492 24 187 91 11 9 40
Below cutoff 1562 1426 937 247 638 140 1876 1239 2238 230 885 925 111 608 1218 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000453244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1335,251,070 - 35,251,829 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PHB1P13 COSMIC
Ensembl Genes ENSG00000234835 Ensembl
GTEx ENSG00000234835 GTEx
HGNC ID HGNC:39292 ENTREZGENE
Human Proteome Map PHB1P13 Human Proteome Map
NCBI Gene 100418843 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-11-15 PHB1P13  PHB1 pseudogene 13  PHBP13  prohibitin pseudogene 13  Symbol and/or name change 19259463 PROVISIONAL