HNRNPA1P10 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 10) - Rat Genome Database

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Gene: HNRNPA1P10 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 10) Homo sapiens
Analyze
Symbol: HNRNPA1P10
Name: heterogeneous nuclear ribonucleoprotein A1 pseudogene 10
RGD ID: 4145402
HGNC Page HGNC:39128
Description: INTERACTS WITH bisphenol A; perfluorooctanoic acid
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: HNRPA1L-2
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,665,736 - 11,667,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,666,069 - 11,667,030 (-)EnsemblGRCh38hg38GRCh38
GRCh371911,776,551 - 11,777,904 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,637,521 - 11,651,981 (-)NCBINCBI36Build 36hg18NCBI36
Celera1636,194,645 - 36,196,002 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,351,443 - 11,352,796 (-)NCBIHuRef
CHM1_11911,776,332 - 11,777,685 (-)NCBICHM1_1
T2T-CHM13v2.01911,793,907 - 11,795,260 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:2836799   PMID:7821789   PMID:15514164   PMID:26760575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:386
Count of miRNA genes:183
Interacting mature miRNAs:187
Transcripts:ENST00000406078, ENST00000444945
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1 1 7 14 14 45
Low 1813 1358 1107 271 1052 140 3384 919 2236 317 1352 1369 145 1 978 1986 5 2
Below cutoff 620 1564 594 330 824 301 957 1251 1474 86 61 235 29 226 791 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000444945
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1911,666,069 - 11,667,030 (-)Ensembl
RefSeq Acc Id: NR_002944
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381911,665,736 - 11,667,089 (-)NCBI
GRCh371911,776,551 - 11,777,904 (-)RGD
Build 361911,637,521 - 11,651,981 (-)NCBI Archive
Celera1936,194,645 - 36,196,002 (+)RGD
HuRef1911,351,443 - 11,352,796 (-)ENTREZGENE
CHM1_11911,776,332 - 11,777,685 (-)NCBI
T2T-CHM13v2.01911,793,907 - 11,795,260 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAA05719 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC HNRNPA1P10 COSMIC
Ensembl Genes ENSG00000214223 Ensembl
GTEx ENSG00000214223 GTEx
HGNC ID HGNC:39128 ENTREZGENE
Human Proteome Map HNRNPA1P10 Human Proteome Map
NCBI Gene 664709 ENTREZGENE