TVP23BP1 (TVP23B pseudogene 1) - Rat Genome Database

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Gene: TVP23BP1 (TVP23B pseudogene 1) Homo sapiens
Analyze
Symbol: TVP23BP1
Name: TVP23B pseudogene 1
RGD ID: 4140303
HGNC Page HGNC:31127
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: FAM18B3P
Related Functional Gene: TVP23B  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381526,964,896 - 26,965,362 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1526,964,917 - 26,970,385 (+)EnsemblGRCh38hg38GRCh38
GRCh371527,210,043 - 27,210,509 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361524,792,808 - 24,793,410 (+)NCBINCBI36Build 36hg18NCBI36
Celera155,371,241 - 5,371,837 (+)NCBICelera
Cytogenetic Map15q12NCBI
HuRef155,338,081 - 5,338,677 (+)NCBIHuRef
CHM1_11527,159,604 - 27,160,200 (+)NCBICHM1_1
T2T-CHM13v2.01524,706,472 - 24,706,938 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:62
Interacting mature miRNAs:62
Transcripts:ENST00000557500
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
6 50 26 12 936 115 46 4 30 4 13 82 77 1 928 25 333 34 1

Sequence


Ensembl Acc Id: ENST00000557500
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1526,964,917 - 26,970,385 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TVP23BP1 COSMIC
Ensembl Genes ENSG00000259122 Ensembl
GTEx ENSG00000259122 GTEx
HGNC ID HGNC:31127 ENTREZGENE
Human Proteome Map TVP23BP1 Human Proteome Map
NCBI Gene 100129124 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-10-22 TVP23BP1  TVP23B pseudogene 1    trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) pseudogene 1  Symbol and/or name change 5135510 APPROVED
2012-12-04 TVP23BP1  trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) pseudogene 1  FAM18B3P  family with sequence similarity 18, member B3, pseudogene  Symbol and/or name change 5135510 APPROVED