LOC120102121 (U4 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120102121 (U4 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120102121
Name: U4 spliceosomal RNA
RGD ID: 41382617
Description: Orthologous to human RNU4-92P (RNA, U4 small nuclear 92, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: U4
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,638,484 - 167,638,625 (-)NCBIGRCr8
mRatBN7.23147,218,608 - 147,218,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,218,608 - 147,218,749 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl3155,054,419 - 155,054,560 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




LOC120102121
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,638,484 - 167,638,625 (-)NCBIGRCr8
mRatBN7.23147,218,608 - 147,218,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,218,608 - 147,218,749 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl3155,054,419 - 155,054,560 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q42NCBI
RNU4-92P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381488,820,297 - 88,820,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1488,820,297 - 88,820,432 (+)EnsemblGRCh38hg38GRCh38
GRCh371489,286,641 - 89,286,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q31.3NCBI
CHM1_11489,224,449 - 89,224,584 (+)NCBICHM1_1
T2T-CHM13v2.01483,043,902 - 83,044,037 (+)NCBIT2T-CHM13v2.0

.

1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145956084157309487Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat

1 to 10 of 41 rows





RefSeq Transcripts XR_005503131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000090484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3147,218,608 - 147,218,749 (-)Ensembl
RefSeq Acc Id: XR_005503131
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,638,484 - 167,638,625 (-)NCBI
mRatBN7.23147,218,608 - 147,218,749 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-47013 BioCyc
Ensembl Genes ENSRNOG00000056709 Ensembl
NCBI Gene LOC120102121 ENTREZGENE
PhenoGen LOC120102121 PhenoGen
RatGTEx ENSRNOG00000056709 RatGTEx
RNAcentral URS000069BF05 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120102121  U4 spliceosomal RNA  U4  U4 spliceosomal RNA  Data merged from RGD:15010457 737654 PROVISIONAL
2021-01-27 LOC120102121  U4 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U4  U4 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL