LOC120097202 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120097202 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120097202
Name: U6 spliceosomal RNA
RGD ID: 41310164
Description: Orthologous to human RNU6-1128P (RNA, U6 small nuclear 1128, pseudogene).
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81513,784,699 - 13,784,799 (-)NCBIGRCr8
mRatBN7.21511,354,206 - 11,354,306 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1511,354,206 - 11,354,306 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1511,354,206 - 11,354,306 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1512,660,626 - 12,660,726 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




LOC120097202
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81513,784,699 - 13,784,799 (-)NCBIGRCr8
mRatBN7.21511,354,206 - 11,354,306 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1511,354,206 - 11,354,306 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1511,354,206 - 11,354,306 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1512,660,626 - 12,660,726 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15p16NCBI
RNU6-1128P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,222,759 - 31,222,848 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,222,745 - 31,222,853 (-)EnsemblGRCh38hg38GRCh38
GRCh372231,618,745 - 31,618,834 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q12.2NCBI
CHM1_12231,578,580 - 31,578,669 (-)NCBICHM1_1
T2T-CHM13v2.02231,686,325 - 31,686,414 (-)NCBIT2T-CHM13v2.0
Gm24668
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391595,504,443 - 95,504,546 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1595,504,443 - 95,504,546 (-)EnsemblGRCm39 Ensembl
GRCm381595,606,562 - 95,606,665 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1595,606,562 - 95,606,665 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map15E3NCBI

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1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat

1 to 10 of 16 rows





GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000079748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1511,354,206 - 11,354,306 (-)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-14371 BioCyc
Ensembl Genes ENSRNOG00000059767 Ensembl
NCBI Gene LOC120097202 ENTREZGENE
PhenoGen LOC120097202 PhenoGen
RatGTEx ENSRNOG00000059767 RatGTEx
RNAcentral URS000064EF42 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097202  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15012811 737654 PROVISIONAL
2021-01-27 LOC120097202  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL