LOC120100357 (small nucleolar RNA SNORA36 family) - Rat Genome Database

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Gene: LOC120100357 (small nucleolar RNA SNORA36 family) Rattus norvegicus
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Symbol: LOC120100357
Name: small nucleolar RNA SNORA36 family
RGD ID: 41305700
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: Gm25410; predicted gene, 25410
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815,042,355 - 5,042,486 (-)NCBIGRCr8
mRatBN7.213,222,063 - 3,222,194 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13,222,063 - 3,222,194 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl12,886,222 - 2,886,353 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120100357
7 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005500124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000079768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl13,222,063 - 3,222,194 (-)Ensembl
RefSeq Acc Id: XR_005500124
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815,042,355 - 5,042,486 (-)NCBI
mRatBN7.213,222,063 - 3,222,194 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62429 BioCyc
Ensembl Genes ENSRNOG00000052788 Ensembl
NCBI Gene LOC120100357 ENTREZGENE
PhenoGen LOC120100357 PhenoGen
RatGTEx ENSRNOG00000052788 RatGTEx
RNAcentral URS000065A5F5 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120100357  small nucleolar RNA SNORA36 family  Gm25410  predicted gene, 25410  Data merged from RGD:15007417 737654 PROVISIONAL
2021-01-27 LOC120100357  small nucleolar RNA SNORA36 family      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Gm25410  predicted gene, 25410      Symbol and Name status set to provisional 45752 PROVISIONAL