Snord17 (small nucleolar RNA, C/D box 17) - Rat Genome Database

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Gene: Snord17 (small nucleolar RNA, C/D box 17) Rattus norvegicus
Analyze
Symbol: Snord17
Name: small nucleolar RNA, C/D box 17
RGD ID: 41276891
Description: INTERACTS WITH 2-hydroxypropanoic acid (ortholog); benzo[a]pyrene (ortholog); bisphenol A (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120102082; small nucleolar RNA SNORD17
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83152,089,843 - 152,090,081 (-)NCBIGRCr8
mRatBN7.23131,636,460 - 131,636,698 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3131,636,460 - 131,636,698 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl3138,393,201 - 138,393,439 (-)EnsemblRnor6.0rn6Rnor6.0
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snord17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83152,089,843 - 152,090,081 (-)NCBIGRCr8
mRatBN7.23131,636,460 - 131,636,698 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3131,636,460 - 131,636,698 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl3138,393,201 - 138,393,439 (-)EnsemblRnor6.0rn6Rnor6.0
Cytogenetic Map3q41NCBI
SNORD17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382017,962,710 - 17,962,946 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2017,962,710 - 17,962,946 (-)EnsemblGRCh38hg38GRCh38
GRCh372017,943,353 - 17,943,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362017,891,353 - 17,891,589 (-)NCBINCBI36Build 36hg18NCBI36
Celera2018,017,899 - 18,018,135 (-)NCBICelera
Cytogenetic Map20p11.23NCBI
HuRef2017,906,219 - 17,906,455 (-)NCBIHuRef
CHM1_12017,943,377 - 17,943,613 (-)NCBICHM1_1
T2T-CHM13v2.02018,013,831 - 18,014,067 (-)NCBIT2T-CHM13v2.0
Snord17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392144,107,902 - 144,108,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2144,107,899 - 144,108,136 (-)EnsemblGRCm39 Ensembl
GRCm382144,265,982 - 144,266,202 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2144,265,979 - 144,266,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv372144,091,718 - 144,091,938 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera2145,454,286 - 145,454,506 (-)NCBICelera
Cytogenetic Map2G1NCBI
cM Map270.98NCBI
LOC119865807
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha245,024,429 - 5,024,666 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0245,500,668 - 5,500,905 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl245,500,668 - 5,500,905 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1245,113,732 - 5,113,969 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0245,207,675 - 5,207,912 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0245,483,750 - 5,483,987 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005503105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000077591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3131,636,460 - 131,636,698 (-)Ensembl
RefSeq Acc Id: XR_005503105
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83152,089,843 - 152,090,081 (-)NCBI
mRatBN7.23131,636,460 - 131,636,698 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-47607 BioCyc
Ensembl Genes ENSRNOG00000052573 Ensembl
NCBI Gene LOC120102082 ENTREZGENE
PhenoGen Snord17 PhenoGen
RatGTEx ENSRNOG00000052573 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-02-10 Snord17  small nucleolar RNA, C/D box 17  LOC120102082  small nucleolar RNA SNORD17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-02-10 LOC120102082  small nucleolar RNA SNORD17  Snord17  small nucleolar RNA, C/D box 17  Data merged from RGD:15007253 737654 PROVISIONAL
2021-01-27 LOC120102082  small nucleolar RNA SNORD17      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snord17  small nucleolar RNA, C/D box 17      Symbol and Name status set to provisional 45752 PROVISIONAL