MIR3156-2 (microRNA 3156-2) - Rat Genome Database

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Gene: MIR3156-2 (microRNA 3156-2) Homo sapiens
Analyze
Symbol: MIR3156-2
Name: microRNA 3156-2
RGD ID: 4108999
HGNC Page HGNC:38213
Description: Located in extracellular exosome.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-3156-2
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381814,830,166 - 14,830,242 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1814,830,166 - 14,830,242 (+)EnsemblGRCh38hg38GRCh38
GRCh371814,830,165 - 14,830,241 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera2129,368 - 29,444 (-)NCBICelera
Cytogenetic Map18p11.21NCBI
HuRef21424,855 - 424,931 (-)NCBIHuRef
CHM1_11814,829,216 - 14,829,292 (+)NCBICHM1_1
T2T-CHM13v2.01814,991,743 - 14,991,819 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR3156-2Humanextracellular exosome located_inIDA 150520179 PMID:31926946ARUK-UCLPMID:31926946

PMID:16381832   PMID:20300190   PMID:21199797   PMID:31926946   PMID:33999360  



.

1 to 10 of 26 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 18p11.32-q23(chr18:149089-80234391)x3 copy number gain See cases [RCV000134110] Chr18:149089..80234391 [GRCh38]
Chr18:149089..77992274 [GRCh37]
Chr18:139089..76093265 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32-q23(chr18:118760-80254946)x3 copy number gain See cases [RCV000138656] Chr18:118760..80254946 [GRCh38]
Chr18:118760..78012829 [GRCh37]
Chr18:108760..76113817 [NCBI36]
Chr18:18p11.32-q23		 pathogenic|conflicting data from submitters
GRCh38/hg38 18p11.32-q23(chr18:149089-80254936)x3 copy number gain See cases [RCV000139397] Chr18:149089..80254936 [GRCh38]
Chr18:149089..78012819 [GRCh37]
Chr18:139089..76113807 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.21(chr18:14418523-15165373)x3 copy number gain See cases [RCV000139060] Chr18:14418523..15165373 [GRCh38]
Chr18:14418522..15165372 [GRCh37]
Chr18:14408522..15155372 [NCBI36]
Chr18:18p11.21		 likely benign
GRCh38/hg38 18p11.32-11.21(chr18:136226-15175006) copy number gain See cases [RCV000140442] Chr18:136226..15175006 [GRCh38]
Chr18:136226..15175005 [GRCh37]
Chr18:126226..15165005 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:118760-15024003)x1 copy number loss See cases [RCV000141086] Chr18:118760..15024003 [GRCh38]
Chr18:118760..15024002 [GRCh37]
Chr18:108760..15014002 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.21(chr18:14807930-14837136)x3 copy number gain See cases [RCV000141091] Chr18:14807930..14837136 [GRCh38]
Chr18:14807929..14837135 [GRCh37]
Chr18:14797929..14827135 [NCBI36]
Chr18:18p11.21		 benign
GRCh38/hg38 18p11.21(chr18:14807930-14850047)x3 copy number gain See cases [RCV000141092] Chr18:14807930..14850047 [GRCh38]
Chr18:14807929..14850046 [GRCh37]
Chr18:14797929..14840046 [NCBI36]
Chr18:18p11.21		 benign
GRCh38/hg38 18p11.21(chr18:14695719-15215783)x3 copy number gain See cases [RCV000141095] Chr18:14695719..15215783 [GRCh38]
Chr18:14695718..15215782 [GRCh37]
Chr18:14685718..15205782 [NCBI36]
Chr18:18p11.21		 benign
GRCh38/hg38 18p11.21(chr18:14695719-15165152)x3 copy number gain See cases [RCV000141097] Chr18:14695719..15165152 [GRCh38]
Chr18:14695718..15165151 [GRCh37]
Chr18:14685718..15155151 [NCBI36]
Chr18:18p11.21		 benign
1 to 10 of 26 rows

Predicted Targets
Summary Value
Count of predictions:22660
Count of gene targets:10759
Count of transcripts:20560
Interacting mature miRNAs:hsa-miR-3156-3p
Prediction methods:Microtar, Miranda, Pita, Pita,Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
3 10 3 6 4 9 8 4 2 1 3 1 6



Ensembl Acc Id: ENST00000581101
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1814,830,166 - 14,830,242 (+)Ensembl
RefSeq Acc Id: NR_036153
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381814,830,166 - 14,830,242 (+)NCBI
GRCh371814,830,165 - 14,830,241 (+)RGD
Celera1829,368 - 29,444 (-)RGD
HuRef18424,855 - 424,931 (-)RGD
CHM1_11814,829,216 - 14,829,292 (+)NCBI
T2T-CHM13v2.01814,991,743 - 14,991,819 (+)NCBI
Sequence:


1 to 12 of 12 rows
Database
Acc Id
Source(s)
COSMIC MIR3156-2 COSMIC
Ensembl Genes ENSG00000265499 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000581101 ENTREZGENE
GTEx ENSG00000265499 GTEx
HGNC ID HGNC:38213 ENTREZGENE
Human Proteome Map MIR3156-2 Human Proteome Map
miRBase MI0014230 ENTREZGENE
NCBI Gene 100422907 ENTREZGENE
PharmGKB PA165429050 PharmGKB
RNAcentral URS0000064063 RNACentral
  URS000075D48C RNACentral
  URS000075D876 RNACentral
1 to 12 of 12 rows