MIR3179-3 (microRNA 3179-3) - Rat Genome Database

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Gene: MIR3179-3 (microRNA 3179-3) Homo sapiens
Analyze
Symbol: MIR3179-3
Name: microRNA 3179-3
RGD ID: 4108888
HGNC Page HGNC:38214
Description: Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381618,411,894 - 18,411,977 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1618,411,894 - 18,411,977 (-)EnsemblGRCh38hg38GRCh38
GRCh371618,505,751 - 18,505,834 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16p12.3NCBI
CHM1_11615,405,552 - 15,405,635 (-)NCBICHM1_1
T2T-CHM13v2.01618,425,614 - 18,425,697 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR3179-3Humanschizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR3179-3Humansodium arsenite increases expressionEXP 6480464sodium arsenite results in increased expression of MIR3179-3 mRNACTDPMID:25879800
MIR3179-3Humantestosterone increases expressionEXP 6480464Testosterone results in increased expression of MIR3179-3 mRNACTDPMID:33359661


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR3179-3HumanmiRNA-mediated post-transcriptional gene silencing involved_inIEARfam:RF02021150520179 RNAcentralGO_REF:0000115

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR3179-3HumanRISC complex part_ofIEARfam:RF02021150520179 RNAcentralGO_REF:0000115

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR3179-3HumanSchizophrenia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
PMID:16381832   PMID:20300190   PMID:21199797  



.

1 to 10 of 26 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 16p13.3-11.2(chr16:4644892-29170820)x3 copy number gain See cases [RCV000133809] Chr16:4644892..29170820 [GRCh38]
Chr16:4694893..29182141 [GRCh37]
Chr16:4634894..29089642 [NCBI36]
Chr16:16p13.3-11.2		 pathogenic
GRCh38/hg38 16p13.11-12.3(chr16:15060830-18535437)x3 copy number gain See cases [RCV000136807] Chr16:15060830..18535437 [GRCh38]
Chr16:15154687..18546759 [GRCh37]
Chr16:15062188..18454260 [NCBI36]
Chr16:16p13.11-12.3		 pathogenic
GRCh38/hg38 16p13.11-12.3(chr16:15261472-18768479)x3 copy number gain See cases [RCV000137451] Chr16:15261472..18768479 [GRCh38]
Chr16:15355329..18779801 [GRCh37]
Chr16:15262830..18687302 [NCBI36]
Chr16:16p13.11-12.3		 likely pathogenic|uncertain significance
GRCh38/hg38 16p13.11-12.3(chr16:14783830-18680735)x3 copy number gain See cases [RCV000137543] Chr16:14783830..18680735 [GRCh38]
Chr16:14877687..18692057 [GRCh37]
Chr16:14785188..18599558 [NCBI36]
Chr16:16p13.11-12.3		 uncertain significance
GRCh38/hg38 16p13.11-12.3(chr16:15194583-18726698)x3 copy number gain See cases [RCV000137588] Chr16:15194583..18726698 [GRCh38]
Chr16:15288440..18738020 [GRCh37]
Chr16:15195941..18645521 [NCBI36]
Chr16:16p13.11-12.3		 likely pathogenic|uncertain significance
GRCh38/hg38 16p13.11-12.3(chr16:16541781-18768479)x3 copy number gain See cases [RCV000137333] Chr16:16541781..18768479 [GRCh38]
Chr16:16635638..18779801 [GRCh37]
Chr16:16543139..18687302 [NCBI36]
Chr16:16p13.11-12.3		 pathogenic|uncertain significance
GRCh38/hg38 16p13.11-12.3(chr16:15186140-18768479)x3 copy number gain See cases [RCV000138546] Chr16:15186140..18768479 [GRCh38]
Chr16:15279997..18779801 [GRCh37]
Chr16:15187498..18687302 [NCBI36]
Chr16:16p13.11-12.3		 uncertain significance
GRCh38/hg38 16p13.11-12.3(chr16:15186140-18783183)x3 copy number gain See cases [RCV000137700] Chr16:15186140..18783183 [GRCh38]
Chr16:15279997..18794505 [GRCh37]
Chr16:15187498..18702006 [NCBI36]
Chr16:16p13.11-12.3		 uncertain significance
GRCh38/hg38 16p12.3(chr16:16753846-18768479)x3 copy number gain See cases [RCV000138195] Chr16:16753846..18768479 [GRCh38]
Chr16:16847703..18779801 [GRCh37]
Chr16:16755204..18687302 [NCBI36]
Chr16:16p12.3		 uncertain significance
GRCh38/hg38 16p13.11-12.3(chr16:14783830-18768479)x3 copy number gain See cases [RCV000138254] Chr16:14783830..18768479 [GRCh38]
Chr16:14877687..18779801 [GRCh37]
Chr16:14785188..18687302 [NCBI36]
Chr16:16p13.11-12.3		 uncertain significance
1 to 10 of 26 rows



adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
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Ensembl Acc Id: ENST00000579566
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1618,411,894 - 18,411,977 (-)Ensembl
RefSeq Acc Id: NR_036145
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381618,411,894 - 18,411,977 (-)NCBI
GRCh371618,505,751 - 18,505,834 (-)RGD
CHM1_11615,405,552 - 15,405,635 (-)NCBI
T2T-CHM13v2.01618,425,614 - 18,425,697 (-)NCBI
Sequence:


1 to 11 of 11 rows
Database
Acc Id
Source(s)
COSMIC MIR3179-3 COSMIC
Ensembl Genes ENSG00000266454 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000579566 ENTREZGENE
GTEx ENSG00000266454 GTEx
HGNC ID HGNC:38214 ENTREZGENE
Human Proteome Map MIR3179-3 Human Proteome Map
miRBase MI0014221 ENTREZGENE
NCBI Gene 100423006 ENTREZGENE
PharmGKB PA165450193 PharmGKB
RNAcentral URS00003AF4CD RNACentral
  URS000064A21C RNACentral
1 to 11 of 11 rows