LOC120097192 (5S ribosomal RNA) - Rat Genome Database

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Gene: LOC120097192 (5S ribosomal RNA) Rattus norvegicus
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Symbol: LOC120097192
Name: 5S ribosomal RNA
RGD ID: 41066627
Description:
Type: pseudo (Ensembl: rRNA)
RefSeq Status: MODEL
Previously known as: 5S_rRNA
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81523,522,043 - 23,522,161 (-)NCBIGRCr8
mRatBN7.21521,042,358 - 21,042,476 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1521,042,358 - 21,042,476 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1521,042,358 - 21,042,476 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1524,591,670 - 24,591,788 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in LOC120097192
4 total Variants

1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat

1 to 10 of 22 rows





GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000052658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1521,042,358 - 21,042,476 (-)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-14136 BioCyc
Ensembl Genes ENSRNOG00000034535 Ensembl
NCBI Gene LOC120097192 ENTREZGENE
PhenoGen LOC120097192 PhenoGen
RatGTEx ENSRNOG00000034535 RatGTEx
RNAcentral URS0000715956 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097192  5S ribosomal RNA  5S_rRNA  5S ribosomal RNA  Data merged from RGD:15004104 737654 PROVISIONAL
2021-01-27 LOC120097192  5S ribosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 5S_rRNA  5S ribosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL