LOC120101770 (protein NDRG3-like) - Rat Genome Database

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Gene: LOC120101770 (protein NDRG3-like) Rattus norvegicus
Analyze
Symbol: LOC120101770 (Ensembl: LOC679863)
Name: protein NDRG3-like (Ensembl:similar to N-myc downstream regulated gene 3)
RGD ID: 41037735
Description:
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,968,084 - 166,003,610 (-)NCBIGRCr8
mRatBN7.23145,548,032 - 145,584,913 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3145,548,041 - 145,650,873 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC120101770
169 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000055232   ⟹   ENSRNOP00000052106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,549,391 - 145,650,873 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103585   ⟹   ENSRNOP00000087669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,548,041 - 145,650,873 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106731   ⟹   ENSRNOP00000089773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,548,041 - 145,572,223 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109829   ⟹   ENSRNOP00000086721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,587,505 - 145,650,829 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115244   ⟹   ENSRNOP00000093170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,548,041 - 145,571,860 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118753   ⟹   ENSRNOP00000083574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,587,505 - 145,650,829 (-)Ensembl
RefSeq Acc Id: XM_039106706   ⟹   XP_038962634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,968,084 - 166,003,610 (-)NCBI
mRatBN7.23145,548,032 - 145,583,559 (-)NCBI
RefSeq Acc Id: XM_039106708   ⟹   XP_038962636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,968,084 - 165,999,053 (-)NCBI
mRatBN7.23145,548,032 - 145,579,002 (-)NCBI
RefSeq Acc Id: XM_063285112   ⟹   XP_063141182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,968,084 - 165,991,971 (-)NCBI
RefSeq Acc Id: XM_063285113   ⟹   XP_063141183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,968,084 - 165,991,971 (-)NCBI
RefSeq Acc Id: XP_038962634   ⟸   XM_039106706
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ASR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962636   ⟸   XM_039106708
- Peptide Label: isoform X4
- UniProtKB: A0A8I6ASR6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086721   ⟸   ENSRNOT00000109829
Ensembl Acc Id: ENSRNOP00000083574   ⟸   ENSRNOT00000118753
Ensembl Acc Id: ENSRNOP00000089773   ⟸   ENSRNOT00000106731
Ensembl Acc Id: ENSRNOP00000052106   ⟸   ENSRNOT00000055232
Ensembl Acc Id: ENSRNOP00000093170   ⟸   ENSRNOT00000115244
Ensembl Acc Id: ENSRNOP00000087669   ⟸   ENSRNOT00000103585
RefSeq Acc Id: XP_063141183   ⟸   XM_063285113
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063141182   ⟸   XM_063285112
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACZ5-F1-model_v2 AlphaFold D4ACZ5 1-346 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-47072 BioCyc
Ensembl Genes ENSRNOG00000036813 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000064950 UniProtKB/TrEMBL
  ENSRNOG00000067832 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000097704.1 UniProtKB/TrEMBL
  ENSRNOT00000101329.1 UniProtKB/TrEMBL
  ENSRNOT00000106731.1 UniProtKB/TrEMBL
  ENSRNOT00000115244.1 UniProtKB/TrEMBL
  ENSRNOT00000118753.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  NDRG UniProtKB/TrEMBL
NCBI Gene LOC120101770 ENTREZGENE
PANTHER PTHR11034 UniProtKB/TrEMBL
  PTHR11034:SF20 UniProtKB/TrEMBL
Pfam Ndr UniProtKB/TrEMBL
PhenoGen LOC120101770 PhenoGen
RatGTEx ENSRNOG00000036813 RatGTEx
  ENSRNOG00000064950 RatGTEx
  ENSRNOG00000067832 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A8I6AJ76_RAT UniProtKB/TrEMBL
  A0A8I6ALQ5_RAT UniProtKB/TrEMBL
  A0A8I6ASR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GAX3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120101770  protein NDRG3-like      Symbol and Name status set to provisional 70820 PROVISIONAL