TSFM (Ts translation elongation factor, mitochondrial) - Rat Genome Database

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Gene: TSFM (Ts translation elongation factor, mitochondrial) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: TSFM
Name: Ts translation elongation factor, mitochondrial
RGD ID: 40918589
Description: ENCODES a protein that exhibits protein-lysine N-methyltransferase activity (inferred); translation elongation factor activity (inferred); INVOLVED IN mitochondrial translational elongation (inferred); regulation of mitochondrial translation (inferred); translation (inferred); FOUND IN cytoplasm (inferred); cytosol (inferred); mitochondrial matrix (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongation factor Ts, mitochondrial
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha101,906,303 - 1,917,732 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,852,568 - 1,864,195 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,843,650 - 1,874,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,830,238 - 1,841,696 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0102,072,302 - 2,083,914 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0102,197,158 - 2,208,607 (+)NCBIUU_Cfam_GSD_1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845012286   ⟹   ENSCAFP00845009604
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl101,843,650 - 1,864,180 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012371   ⟹   ENSCAFP00845009671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl101,843,650 - 1,850,676 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012399   ⟹   ENSCAFP00845009692
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl101,843,650 - 1,850,676 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012432   ⟹   ENSCAFP00845009717
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl101,852,576 - 1,864,180 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012459   ⟹   ENSCAFP00845009735
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl101,852,603 - 1,874,913 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012475   ⟹   ENSCAFP00845009745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl101,852,603 - 1,863,629 (+)Ensembl
RefSeq Acc Id: XM_038487934   ⟹   XP_038343862
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,830,238 - 1,841,696 (+)NCBI
RefSeq Acc Id: XM_038487935   ⟹   XP_038343863
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,830,265 - 1,841,696 (+)NCBI
RefSeq Acc Id: XM_038549827   ⟹   XP_038405755
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0102,197,158 - 2,208,607 (+)NCBI
RefSeq Acc Id: XM_038549828   ⟹   XP_038405756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0102,197,185 - 2,208,607 (+)NCBI
RefSeq Acc Id: XM_038613794   ⟹   XP_038469722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0102,072,302 - 2,083,914 (+)NCBI
RefSeq Acc Id: XM_038613795   ⟹   XP_038469723
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0102,072,329 - 2,083,914 (+)NCBI
RefSeq Acc Id: XM_038633654   ⟹   XP_038489582
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha101,906,303 - 1,917,732 (+)NCBI
RefSeq Acc Id: XM_038633663   ⟹   XP_038489591
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha101,906,330 - 1,917,732 (+)NCBI
RefSeq Acc Id: XM_038679149   ⟹   XP_038535077
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,852,568 - 1,864,195 (+)NCBI
RefSeq Acc Id: XM_038679150   ⟹   XP_038535078
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,852,595 - 1,864,195 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038343862   ⟸   XM_038487934
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038343863   ⟸   XM_038487935
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469722   ⟸   XM_038613794
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038469723   ⟸   XM_038613795
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038535077   ⟸   XM_038679149
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Z0Z2 (UniProtKB/TrEMBL),   A0A8I3MVU0 (UniProtKB/TrEMBL),   A0A8C0MDT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535078   ⟸   XM_038679150
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038489582   ⟸   XM_038633654
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Z0Z2 (UniProtKB/TrEMBL),   A0A8I3MVU0 (UniProtKB/TrEMBL),   A0A8C0MDT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038489591   ⟸   XM_038633663
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038405755   ⟸   XM_038549827
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MDT7 (UniProtKB/TrEMBL),   A0A8C0Z0Z2 (UniProtKB/TrEMBL),   A0A8I3MVU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405756   ⟸   XM_038549828
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845009745   ⟸   ENSCAFT00845012475
RefSeq Acc Id: ENSCAFP00845009692   ⟸   ENSCAFT00845012399
RefSeq Acc Id: ENSCAFP00845009735   ⟸   ENSCAFT00845012459
RefSeq Acc Id: ENSCAFP00845009604   ⟸   ENSCAFT00845012286
RefSeq Acc Id: ENSCAFP00845009717   ⟸   ENSCAFT00845012432
RefSeq Acc Id: ENSCAFP00845009671   ⟸   ENSCAFT00845012371
Protein Domains
Translation elongation factor EFTs/EF1B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000293 UniProtKB/TrEMBL
  ENSCAFG00030005247 UniProtKB/TrEMBL
  ENSCAFG00040017700 UniProtKB/TrEMBL
  ENSCAFG00845006879 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000451.5 UniProtKB/TrEMBL
  ENSCAFT00030009758.1 UniProtKB/TrEMBL
  ENSCAFT00030009812.1 UniProtKB/TrEMBL
  ENSCAFT00040033068.1 UniProtKB/TrEMBL
  ENSCAFT00040033086.1 UniProtKB/TrEMBL
  ENSCAFT00845012286.1 UniProtKB/TrEMBL
  ENSCAFT00845012371.1 UniProtKB/TrEMBL
  ENSCAFT00845012399.1 UniProtKB/TrEMBL
  ENSCAFT00845012432 ENTREZGENE
  ENSCAFT00845012432.1 UniProtKB/TrEMBL
  ENSCAFT00845012459.1 UniProtKB/TrEMBL
  ENSCAFT00845012475.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.479.20 UniProtKB/TrEMBL
  3.40.50.150 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro EF-Ts_dimer_sf UniProtKB/TrEMBL
  Methyltransf_16 UniProtKB/TrEMBL
  SAM-dependent_MTases_sf UniProtKB/TrEMBL
  Transl_elong_EFTs/EF1B UniProtKB/TrEMBL
  Transl_elong_EFTs/EF1B_dimer UniProtKB/TrEMBL
  Transl_elong_Ts_CS UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
NCBI Gene TSFM ENTREZGENE
PANTHER EEF1A LYSINE METHYLTRANSFERASE 3 UniProtKB/TrEMBL
  ELONGATION FACTOR TS, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR11741 UniProtKB/TrEMBL
  PTHR14614 UniProtKB/TrEMBL
Pfam EF_TS UniProtKB/TrEMBL
  Methyltransf_16 UniProtKB/TrEMBL
PROSITE EF_TS_1 UniProtKB/TrEMBL
  EF_TS_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF53335 UniProtKB/TrEMBL
  SSF54713 UniProtKB/TrEMBL
UniProt A0A8C0MDT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T0A8_CANLF UniProtKB/TrEMBL
  A0A8C0Z0Z2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MTT3_CANLF UniProtKB/TrEMBL
  A0A8I3MVU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N2R7_CANLF UniProtKB/TrEMBL
  A0A8I3N4Q7_CANLF UniProtKB/TrEMBL
  A0A8I3NFZ7_CANLF UniProtKB/TrEMBL
  A0A8I3RV52_CANLF UniProtKB/TrEMBL