LOC119872409 (small nucleolar RNA SNORD60) - Rat Genome Database

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Gene: LOC119872409 (small nucleolar RNA SNORD60) Canis lupus familiaris
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Symbol: LOC119872409
Name: small nucleolar RNA SNORD60
RGD ID: 40915844
Description: INVOLVED IN intracellular cholesterol transport (ortholog); ASSOCIATED WITH endometrial carcinoma (ortholog)
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha640,045,267 - 40,045,350 (+)NCBI
ROS_Cfam_1.0639,114,630 - 39,114,713 (+)NCBI
UMICH_Zoey_3.1638,799,467 - 38,799,550 (+)NCBI
UNSW_CanFamBas_1.0638,771,771 - 38,771,854 (+)NCBI
UU_Cfam_GSD_1.0639,250,529 - 39,250,612 (+)NCBI


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
LOC119872409
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha640,045,267 - 40,045,350 (+)NCBI
ROS_Cfam_1.0639,114,630 - 39,114,713 (+)NCBI
UMICH_Zoey_3.1638,799,467 - 38,799,550 (+)NCBI
UNSW_CanFamBas_1.0638,771,771 - 38,771,854 (+)NCBI
UU_Cfam_GSD_1.0639,250,529 - 39,250,612 (+)NCBI
SNORD60
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,155,023 - 2,155,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl162,155,023 - 2,155,105 (-)EnsemblGRCh38hg38GRCh38
GRCh37162,205,024 - 2,205,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,145,025 - 2,145,107 (-)NCBINCBI36hg18NCBI36
Build 34162,145,024 - 2,145,107NCBI
Celera162,419,443 - 2,419,525 (-)NCBI
Cytogenetic Map16p13.3NCBI
HuRef162,131,291 - 2,131,373 (-)NCBIHuRef
CHM1_1162,204,999 - 2,205,081 (-)NCBICHM1_1
Snord60
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,747,450 - 24,747,527 (+)NCBIGRCm39mm39
GRCm39 Ensembl1724,747,450 - 24,747,527 (+)Ensembl
GRCm381724,528,476 - 24,528,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,528,476 - 24,528,553 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17A3.3NCBI
LOC120095400
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21013,552,773 - 13,552,855 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1013,552,773 - 13,552,855 (+)Ensembl


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_005327861
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1638,799,467 - 38,799,550 (+)NCBI
RefSeq Acc Id: XR_005361502
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0639,250,529 - 39,250,612 (+)NCBI
RefSeq Acc Id: XR_005370513
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha640,045,267 - 40,045,350 (+)NCBI
RefSeq Acc Id: XR_005396016
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0638,771,771 - 38,771,854 (+)NCBI
RefSeq Acc Id: XR_005429248
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0639,114,630 - 39,114,713 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845015736 ENTREZGENE
Ensembl Transcript ENSCAFT00845028037 ENTREZGENE
NCBI Gene LOC119872409 ENTREZGENE