LOC119872409 (small nucleolar RNA SNORD60) - Rat Genome Database

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Gene: LOC119872409 (small nucleolar RNA SNORD60) Canis lupus familiaris
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Symbol: LOC119872409
Name: small nucleolar RNA SNORD60
RGD ID: 40915844
Description: INVOLVED IN intracellular cholesterol transport (ortholog); ASSOCIATED WITH endometrial carcinoma (ortholog); tuberous sclerosis 2 (ortholog)
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha640,045,267 - 40,045,350 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,114,630 - 39,114,713 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1638,799,467 - 38,799,550 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,771,771 - 38,771,854 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,250,529 - 39,250,612 (+)NCBIUU_Cfam_GSD_1.0


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
LOC119872409
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha640,045,267 - 40,045,350 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,114,630 - 39,114,713 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1638,799,467 - 38,799,550 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,771,771 - 38,771,854 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,250,529 - 39,250,612 (+)NCBIUU_Cfam_GSD_1.0
SNORD60
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,155,023 - 2,155,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,155,023 - 2,155,105 (-)EnsemblGRCh38hg38GRCh38
GRCh37162,205,024 - 2,205,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,145,025 - 2,145,107 (-)NCBINCBI36Build 36hg18NCBI36
Build 34162,145,024 - 2,145,107NCBI
Celera162,419,443 - 2,419,525 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,131,291 - 2,131,373 (-)NCBIHuRef
CHM1_1162,204,999 - 2,205,081 (-)NCBICHM1_1
T2T-CHM13v2.0162,177,485 - 2,177,567 (-)NCBIT2T-CHM13v2.0
Snord60
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,747,450 - 24,747,527 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,747,450 - 24,747,527 (+)EnsemblGRCm39 Ensembl
GRCm381724,528,476 - 24,528,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,528,476 - 24,528,553 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17A3.3NCBI
Snord60
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,057,320 - 14,057,402 (+)NCBIGRCr8
mRatBN7.21013,552,773 - 13,552,855 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,552,773 - 13,552,855 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1013,893,646 - 13,893,728 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map10q12NCBI


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_005327861
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1638,799,467 - 38,799,550 (+)NCBI
RefSeq Acc Id: XR_005361502
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0639,250,529 - 39,250,612 (+)NCBI
RefSeq Acc Id: XR_005370513
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha640,045,267 - 40,045,350 (+)NCBI
RefSeq Acc Id: XR_005396016
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0638,771,771 - 38,771,854 (+)NCBI
RefSeq Acc Id: XR_005429248
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0639,114,630 - 39,114,713 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845015736 ENTREZGENE
Ensembl Transcript ENSCAFT00845028037 ENTREZGENE
NCBI Gene LOC119872409 ENTREZGENE