LOC119872231 (pepsin B-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC119872231 (pepsin B-like) Canis lupus familiaris
Analyze
Symbol: LOC119872231 (Ensembl: PGB1)
Name: pepsin B-like (Ensembl:pepsinogen B1)
RGD ID: 40915673
Description: ENCODES a protein that exhibits aspartic-type endopeptidase activity (inferred); INVOLVED IN proteolysis (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0640,990,556 - 40,999,543 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,990,446 - 41,050,878 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,671,685 - 40,680,657 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,641,507 - 40,650,490 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0641,116,247 - 41,125,226 (+)NCBIUU_Cfam_GSD_1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038479723   ⟹   XP_038335651
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1640,671,685 - 40,680,657 (+)NCBI
RefSeq Acc Id: XM_038540998   ⟹   XP_038396926
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0641,116,247 - 41,125,226 (+)NCBI
RefSeq Acc Id: XM_038605125   ⟹   XP_038461053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0640,641,507 - 40,650,490 (+)NCBI
RefSeq Acc Id: XM_038669800   ⟹   XP_038525728
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0640,990,556 - 40,999,543 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038335651   ⟸   XM_038479723
RefSeq Acc Id: XP_038461053   ⟸   XM_038605125
RefSeq Acc Id: XP_038525728   ⟸   XM_038669800
- UniProtKB: A0A8C0NS98 (UniProtKB/TrEMBL),   A0A8I3RPY8 (UniProtKB/TrEMBL),   A0A8P0SQ07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038396926   ⟸   XM_038540998
- UniProtKB: A0A8C0NS98 (UniProtKB/TrEMBL),   A0A8I3RPY8 (UniProtKB/TrEMBL),   A0A8P0SQ07 (UniProtKB/TrEMBL)
Protein Domains
Peptidase A1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024344 UniProtKB/TrEMBL
  ENSCAFG00030016483 UniProtKB/TrEMBL
  ENSCAFG00040012360 UniProtKB/TrEMBL
  ENSCAFG00845001440 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000037586.5 UniProtKB/TrEMBL
  ENSCAFT00000047265.3 UniProtKB/TrEMBL
  ENSCAFT00030030384.1 UniProtKB/TrEMBL
  ENSCAFT00040022814.1 UniProtKB/TrEMBL
  ENSCAFT00845002511.1 UniProtKB/TrEMBL
  ENSCAFT00845002525 ENTREZGENE
  ENSCAFT00845002525.1 UniProtKB/TrEMBL
  ENSCAFT00845002550.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.70.10 UniProtKB/TrEMBL
  6.10.140.60 UniProtKB/TrEMBL
InterPro Aspartic_peptidase_A1 UniProtKB/TrEMBL
  Aspartic_peptidase_AS UniProtKB/TrEMBL
  Aspartic_peptidase_N UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
  Peptidase_aspartic_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC119872231 ENTREZGENE
PANTHER PEPTIDASE A1 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR47966 UniProtKB/TrEMBL
Pfam A1_Propeptide UniProtKB/TrEMBL
  Asp UniProtKB/TrEMBL
PRINTS PEPSIN UniProtKB/TrEMBL
PROSITE ASP_PROTEASE UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
Superfamily-SCOP SSF50630 UniProtKB/TrEMBL
UniProt A0A8C0NS98 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MDW0_CANLF UniProtKB/TrEMBL
  A0A8I3RPY8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RRI8_CANLF UniProtKB/TrEMBL
  A0A8P0SQ07 ENTREZGENE, UniProtKB/TrEMBL