LOC119866956 (U5 spliceosomal RNA) - Rat Genome Database

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Gene: LOC119866956 (U5 spliceosomal RNA) Canis lupus familiaris
Analyze
Symbol: LOC119866956 (Ensembl: U5)
Name: U5 spliceosomal RNA
RGD ID: 40909939
Description: INVOLVED IN formation of quadruple SL/U4/U5/U6 snRNP (inferred); spliceosomal tri-snRNP complex assembly (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN U4/U6 x U5 tri-snRNP complex (inferred); U5 snRNP (inferred)
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3029,597,404 - 29,597,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03029,858,660 - 29,858,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3029,858,660 - 29,858,775 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13029,789,474 - 29,789,589 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03029,851,215 - 29,851,330 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03030,093,389 - 30,093,504 (+)NCBIUU_Cfam_GSD_1.0


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
LOC119866956
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3029,597,404 - 29,597,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03029,858,660 - 29,858,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3029,858,660 - 29,858,775 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13029,789,474 - 29,789,589 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03029,851,215 - 29,851,330 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03030,093,389 - 30,093,504 (+)NCBIUU_Cfam_GSD_1.0
RNU5B-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381565,304,677 - 65,304,793 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1565,304,677 - 65,304,792 (+)EnsemblGRCh38hg38GRCh38
GRCh371565,597,015 - 65,597,131 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361563,384,068 - 63,384,184 (+)NCBINCBI36Build 36hg18NCBI36
Build 34976,613,646 - 76,613,679NCBI
Celera1542,475,189 - 42,475,305 (+)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1542,421,022 - 42,421,138 (+)NCBIHuRef
CHM1_11565,716,738 - 65,716,854 (+)NCBICHM1_1
T2T-CHM13v2.01563,114,055 - 63,114,171 (+)NCBIT2T-CHM13v2.0
Gm25313
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,103,854 - 65,103,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl965,103,854 - 65,103,969 (-)EnsemblGRCm39 Ensembl
GRCm38965,196,572 - 65,196,687 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,196,572 - 65,196,687 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9CNCBI
LOC120094550
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8874,612,687 - 74,612,802 (-)NCBIGRCr8
mRatBN7.2865,717,512 - 65,717,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl865,717,512 - 65,717,627 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map8q24NCBI


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845044487
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3029,858,660 - 29,858,775 (+)Ensembl
RefSeq Acc Id: XR_005305062
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03029,858,660 - 29,858,775 (+)NCBI
RefSeq Acc Id: XR_005316570
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3029,597,404 - 29,597,519 (+)NCBI
RefSeq Acc Id: XR_005348215
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13029,789,474 - 29,789,589 (+)NCBI
RefSeq Acc Id: XR_005381908
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03030,093,389 - 30,093,504 (+)NCBI
RefSeq Acc Id: XR_005415689
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03029,851,215 - 29,851,330 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845025218 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845044487 ENTREZGENE
NCBI Gene LOC119866956 ENTREZGENE
RNAcentral URS00006E9BE4 RNACentral