Gm25313 (predicted gene, 25313) - Rat Genome Database

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Gene: Gm25313 (predicted gene, 25313) Mus musculus
Analyze
Symbol: Gm25313
Name: predicted gene, 25313
RGD ID: 14997032
MGI Page MGI
Description: INTERACTS WITH 2-hydroxypropanoic acid (ortholog); doxorubicin (ortholog); potassium chromate (ortholog)
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,103,854 - 65,103,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl965,103,854 - 65,103,969 (-)EnsemblGRCm39 Ensembl
GRCm38965,196,572 - 65,196,687 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,196,572 - 65,196,687 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm25313
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,103,854 - 65,103,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl965,103,854 - 65,103,969 (-)EnsemblGRCm39 Ensembl
GRCm38965,196,572 - 65,196,687 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,196,572 - 65,196,687 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9CNCBI
RNU5B-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381565,304,677 - 65,304,793 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1565,304,677 - 65,304,792 (+)EnsemblGRCh38hg38GRCh38
GRCh371565,597,015 - 65,597,131 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361563,384,068 - 63,384,184 (+)NCBINCBI36Build 36hg18NCBI36
Build 34976,613,646 - 76,613,679NCBI
Celera1542,475,189 - 42,475,305 (+)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1542,421,022 - 42,421,138 (+)NCBIHuRef
CHM1_11565,716,738 - 65,716,854 (+)NCBICHM1_1
T2T-CHM13v2.01563,114,055 - 63,114,171 (+)NCBIT2T-CHM13v2.0
LOC120094550
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8874,612,687 - 74,612,802 (-)NCBIGRCr8
mRatBN7.2865,717,512 - 65,717,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl865,717,512 - 65,717,627 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map8q24NCBI
LOC119866956
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3029,597,404 - 29,597,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03029,858,660 - 29,858,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3029,858,660 - 29,858,775 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13029,789,474 - 29,789,589 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03029,851,215 - 29,851,330 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03030,093,389 - 30,093,504 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm25313
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:45
Interacting mature miRNAs:45
Transcripts:ENSMUST00000101817
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1301965Vmbic5_mventral midbrain iron content 5 (mouse)Not determined95759149265831177Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95780504771481754Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95878431868556008Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004935972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000093721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl965,103,854 - 65,103,969 (-)Ensembl
RefSeq Acc Id: ENSMUST00000101817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl965,196,572 - 65,196,687 (-)Ensembl
RefSeq Acc Id: XR_004935972
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39965,103,854 - 65,103,969 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095738 Ensembl
  ENSMUSG00000118734 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000093721 ENTREZGENE
MGD MGI:5455090 ENTREZGENE
NCBI Gene Gm25313 ENTREZGENE
PhenoGen Gm25313 PhenoGen