LOC119864036 (U2 spliceosomal RNA) - Rat Genome Database

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Gene: LOC119864036 (U2 spliceosomal RNA) Canis lupus familiaris
Analyze
Symbol: LOC119864036 (Ensembl: U2)
Name: U2 spliceosomal RNA
RGD ID: 40908217
Description: ENCODES an snrna that exhibits pre-mRNA branch point binding (inferred); INVOLVED IN mRNA branch site recognition (inferred); FOUND IN U2 snRNP (inferred)
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1759,396,494 - 59,396,684 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,967,092 - 60,967,282 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,967,092 - 60,967,282 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,796,228 - 59,796,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,880,592 - 59,880,782 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,608,797 - 60,608,987 (+)NCBIUU_Cfam_GSD_1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
U2 snRNP  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
LOC119864036
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1759,396,494 - 59,396,684 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,967,092 - 60,967,282 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,967,092 - 60,967,282 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,796,228 - 59,796,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,880,592 - 59,880,782 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,608,797 - 60,608,987 (+)NCBIUU_Cfam_GSD_1.0
RNU2-56P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382018,265,692 - 18,265,879 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2018,265,690 - 18,265,879 (-)EnsemblGRCh38hg38GRCh38
GRCh372018,246,336 - 18,246,523 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20p11.23NCBI
CHM1_12018,246,332 - 18,246,519 (-)NCBICHM1_1
T2T-CHM13v2.02018,316,787 - 18,316,974 (-)NCBIT2T-CHM13v2.0
LOC120101398
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82107,607,000 - 107,607,189 (-)NCBIGRCr8
mRatBN7.22105,678,120 - 105,678,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2105,678,120 - 105,678,309 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2108,115,658 - 108,115,847 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q24NCBI


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845035415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1760,967,092 - 60,967,282 (+)Ensembl
RefSeq Acc Id: XR_005295925
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01760,967,092 - 60,967,282 (+)NCBI
RefSeq Acc Id: XR_005311468
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1759,396,494 - 59,396,684 (+)NCBI
RefSeq Acc Id: XR_005339197
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11759,796,228 - 59,796,418 (+)NCBI
RefSeq Acc Id: XR_005372835
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01760,608,797 - 60,608,987 (+)NCBI
RefSeq Acc Id: XR_005406923
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01759,880,592 - 59,880,782 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845020107 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845035415 ENTREZGENE
NCBI Gene LOC119864036 ENTREZGENE
RNAcentral URS0000E814E6 RNACentral