RNU2-56P (RNA, U2 small nuclear 56, pseudogene) - Rat Genome Database

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Gene: RNU2-56P (RNA, U2 small nuclear 56, pseudogene) Homo sapiens
Analyze
Symbol: RNU2-56P
Name: RNA, U2 small nuclear 56, pseudogene
RGD ID: 10399001
HGNC Page HGNC:48549
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU2-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382018,265,692 - 18,265,879 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2018,265,690 - 18,265,879 (-)EnsemblGRCh38hg38GRCh38
GRCh372018,246,336 - 18,246,523 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20p11.23NCBI
CHM1_12018,246,332 - 18,246,519 (-)NCBICHM1_1
T2T-CHM13v2.02018,316,787 - 18,316,974 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU2-56P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382018,265,692 - 18,265,879 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2018,265,690 - 18,265,879 (-)EnsemblGRCh38hg38GRCh38
GRCh372018,246,336 - 18,246,523 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20p11.23NCBI
CHM1_12018,246,332 - 18,246,519 (-)NCBICHM1_1
T2T-CHM13v2.02018,316,787 - 18,316,974 (-)NCBIT2T-CHM13v2.0
LOC120101398
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82107,607,000 - 107,607,189 (-)NCBIGRCr8
mRatBN7.22105,678,120 - 105,678,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2105,678,120 - 105,678,309 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2108,115,658 - 108,115,847 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q24NCBI
LOC119864036
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1759,396,494 - 59,396,684 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,967,092 - 60,967,282 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,967,092 - 60,967,282 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,796,228 - 59,796,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,880,592 - 59,880,782 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,608,797 - 60,608,987 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:201
Count of miRNA genes:188
Interacting mature miRNAs:192
Transcripts:ENST00000516826
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643385BW311_HBody weight QTL 311 (human)3.310.0001Body fat amount20734547523289549Human
1643383BW312_HBody weight QTL 312 (human)2.920.0004Body fat amountpercent fat20734547523289549Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
3 12 15 10 24 7 19 1 6 11 32 26 2 16 7 52 16 1

Sequence


Ensembl Acc Id: ENST00000516826
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2018,265,690 - 18,265,879 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU2-56P COSMIC
Ensembl Genes ENSG00000252635 Ensembl, ENTREZGENE
GTEx ENSG00000252635 GTEx
HGNC ID HGNC:48549 ENTREZGENE
Human Proteome Map RNU2-56P Human Proteome Map
NCBI Gene RNU2-56P ENTREZGENE