SLN (sarcolipin) - Rat Genome Database

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Gene: SLN (sarcolipin) Chlorocebus sabaeus
Analyze
Symbol: SLN
Name: sarcolipin
RGD ID: 40893021
Description: ENCODES a protein that exhibits enzyme regulator activity (inferred); INVOLVED IN negative regulation of ATPase-coupled calcium transmembrane transporter activity (ortholog); positive regulation of cold-induced thermogenesis (ortholog); regulation of ATPase-coupled calcium transmembrane transporter activity (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); sarcoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl199,138,691 - 99,138,783 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604326,806,835 - 26,811,692 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl199,138,691 - 99,138,783 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604326,806,835 - 26,811,692 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811107,707,378 - 107,712,056 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11107,707,378 - 107,719,693 (-)EnsemblGRCh38hg38GRCh38
GRCh3711107,578,104 - 107,582,782 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611107,083,311 - 107,087,997 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411107,083,318 - 107,087,992NCBI
Celera11104,732,928 - 104,737,614 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11103,503,607 - 103,508,293 (-)NCBIHuRef
CHM1_111107,461,092 - 107,465,778 (-)NCBICHM1_1
T2T-CHM13v2.011107,714,519 - 107,719,197 (-)NCBIT2T-CHM13v2.0
Sln
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,757,535 - 53,761,133 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl953,757,448 - 53,761,844 (+)EnsemblGRCm39 Ensembl
GRCm38953,850,251 - 53,853,849 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,850,164 - 53,854,560 (+)EnsemblGRCm38mm10GRCm38
MGSCv37953,698,058 - 53,701,656 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36953,648,301 - 53,652,699 (+)NCBIMGSCv36mm8
Celera951,103,522 - 51,107,120 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.24NCBI
Sln
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8863,117,577 - 63,144,290 (+)NCBIGRCr8
mRatBN7.2854,221,389 - 54,248,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl854,243,542 - 54,247,791 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx859,769,138 - 59,773,376 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0858,048,175 - 58,052,413 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,912,413 - 55,916,653 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0858,431,407 - 58,435,654 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl858,431,407 - 58,435,654 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0857,012,681 - 57,016,928 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4857,314,470 - 57,318,717 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1857,333,523 - 57,337,770 (+)NCBI
Celera853,734,853 - 53,739,100 (+)NCBICelera
Cytogenetic Map8q24NCBI
Sln
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541210,057,481 - 10,062,178 (-)NCBIChiLan1.0ChiLan1.0
SLN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29108,456,086 - 108,460,904 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111109,549,936 - 109,554,737 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011102,598,123 - 102,602,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111106,076,861 - 106,081,534 (-)NCBIpanpan1.1PanPan1.1panPan2
SLN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,710,057 - 24,716,834 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,716,293 - 24,716,388 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha524,620,257 - 24,635,538 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0524,723,952 - 24,739,263 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl524,738,722 - 24,738,817 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1524,777,045 - 24,792,319 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0524,671,675 - 24,686,937 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0524,731,535 - 24,746,784 (+)NCBIUU_Cfam_GSD_1.0
SLN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,232,968 - 36,242,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1936,232,955 - 36,242,405 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,309,123 - 40,318,575 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sln
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247842,488,580 - 2,489,178 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038005252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000017934   ⟹   ENSCSAP00000017405
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl199,138,691 - 99,138,783 (-)Ensembl
RefSeq Acc Id: XM_038005252   ⟹   XP_037861180
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604326,806,835 - 26,811,692 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037861180 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017405.1
RefSeq Acc Id: XP_037861180   ⟸   XM_038005252
- UniProtKB: A0A0D9S966 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000017405   ⟸   ENSCSAT00000017934


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000601 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017934.1 UniProtKB/TrEMBL
InterPro Sarcolipin UniProtKB/TrEMBL
NCBI Gene SLN ENTREZGENE
Pfam Sarcolipin UniProtKB/TrEMBL
UniProt A0A0D9S966 ENTREZGENE, UniProtKB/TrEMBL