Pabpc1l2b (poly(A) binding protein cytoplasmic 1 like 2B) - Rat Genome Database

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Gene: Pabpc1l2b (poly(A) binding protein cytoplasmic 1 like 2B) Rattus norvegicus
Analyze
Symbol: Pabpc1l2b
Name: poly(A) binding protein cytoplasmic 1 like 2B
RGD ID: 402146755
Description: ASSOCIATED WITH autistic disorder (ortholog); Cornelia de Lange syndrome 5 (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine (ortholog); aflatoxin B1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polyadenylate-binding protein 1-like 2
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X72,133,639 - 72,136,612 (-)NCBIGRCr8


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Pabpc1l2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X72,133,639 - 72,136,612 (-)NCBIGRCr8
PABPC1L2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X73,002,939 - 73,006,106 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX73,002,939 - 73,006,106 (+)EnsemblGRCh38hg38GRCh38
GRCh37X72,222,778 - 72,225,945 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X72,140,077 - 72,142,276 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX72,580,392 - 72,582,591 (-)NCBICelera
Cytogenetic MapXq13.2NCBI
HuRefX65,860,211 - 65,861,320 (+)NCBIHuRef
CHM1_1X72,115,915 - 72,118,117 (+)NCBICHM1_1
T2T-CHM13v2.0X71,436,440 - 71,439,607 (+)NCBIT2T-CHM13v2.0
Pabpc1l2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X102,057,169 - 102,059,814 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX102,057,304 - 102,057,993 (+)EnsemblGRCm39 Ensembl
GRCm38X103,013,563 - 103,016,208 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX103,013,698 - 103,014,387 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X100,208,932 - 100,209,848 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X99,215,492 - 99,217,228 (+)NCBIMGSCv36mm8
Cytogenetic MapXDNCBI
cM MapX45.86NCBI
LOC100976163
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X72,673,775 - 72,676,236 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X72,676,971 - 72,679,844 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X62,242,922 - 62,246,300 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X72,365,306 - 72,367,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX72,365,551 - 72,366,153 (+)Ensemblpanpan1.1panPan2
PABPC1L2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 EnsemblX62,691,935 - 62,692,537 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660654,507,260 - 4,510,139 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063280437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_063280437   ⟹   XP_063136507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X72,133,639 - 72,136,612 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063136507 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063136507   ⟸   XM_063280437


Additional Information

Database Acc Id Source(s)
NCBI Gene Pabpc1l2b ENTREZGENE
PhenoGen Pabpc1l2b PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-05 Pabpc1l2b  poly(A) binding protein cytoplasmic 1 like 2B      Symbol and Name status set to provisional 70820 PROVISIONAL