LOC132444220 (STARR-positive B cell enhancer mm9_chr17:3451087-3451388)

Gene: LOC132444220 (STARR-positive B cell enhancer mm9_chr17:3451087-3451388) Mus musculus

Analyze

Symbol:

LOC132444220

Name:

STARR-positive B cell enhancer mm9_chr17:3451087-3451388

RGD ID:

401835304

Description:

This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]

Type:

biological-region

RefSeq Status:

REVIEWED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	3,501,362 - 3,501,663 (+)	NCBI	GRCm39	GRCm39	mm39

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:31873292	PMID:31873293

Genomics

Variants

Variants in LOC132444220
7 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357452	Vtbt18_m	vertebral trabecular bone trait 18 (mouse)			Not determined		17	1	20975022	Mouse
1302196	Myaa1_m	modifier of Yaa 1 (mouse)			Not determined		17	1	20975022	Mouse
1357902	Obq19_m	obesity QTL 19 (mouse)			Not determined		17	1	25662076	Mouse
12910982	Pifs2_m	peptide-induced fatal syndrome 2 (mouse)					17	1	26189355	Mouse
1357743	Lith3_m	lithogenic gene 3 (mouse)			Not determined		17	1	26194456	Mouse
1301615	Cfld3_m	cystic fibrosis lung disease 3 (mouse)			Not determined		17	1	27081639	Mouse
1300613	Pcyts4_m	plasmacytoma susceptibility 4 (mouse)			Not determined		17	1	27081639	Mouse
1302100	Circp2_m	circadian photosensitivity 2 (mouse)			Not determined		17	1	29198453	Mouse
12910527	Nrq1a_m	noise-induced hearing loss resistant QTL 1a (mouse)					17	1	29198453	Mouse
12910528	Nrq1_m	noise-induced hearing loss resistant QTL 1 (mouse)					17	1	29198453	Mouse
13524851	Asrq8_m	acoustic startle response 8 (mouse)					17	1	31030170	Mouse
10412276	Leci2_m	leukocyte endothelial cell interactions 2 (mouse)			Not determined		17	3348175	37348299	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_240638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC122350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC132444220	ENTREZGENE
PhenoGen	LOC132444220	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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