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Gene: Gm12100 (predicted gene 12100) Mus musculus

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Symbol:

Gm12100

Name:

predicted gene 12100

RGD ID:

3917930

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	30,700,832 - 30,706,128 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	30,699,011 - 30,706,147 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	30,749,950 - 30,754,640 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	30,750,832 - 30,756,147 (+)	Ensembl	GRCm38		mm10	GRCm38
cM Map	11	18.16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gm12100	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gm12100	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gm12100	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073	PMID:18799693	PMID:21267068

Variants in Gm12100
209 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	109
Count of miRNA genes:	106
Interacting mature miRNAs:	109
Transcripts:	ENSMUST00000150255
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357844	Si5lq5_m	serum IGFBP-5 level QTL 5 (mouse)			Not determined		11	28165873	62165976	Mouse
1302171	Pgia28_m	proteoglycan induced arthritis 28 (mouse)			Not determined		11	8906097	42906218	Mouse
1357720	Kidpq1_m	kidney weight percentage QTL 1 (mouse)			Not determined		11	12268637	68500330	Mouse
1357851	Scfq3_m	subcutaneous fat pad weight QTL 3 (mouse)			Not determined		11	12268637	68500330	Mouse
12910804	Pwbwq16_m	post-weaning body weight QTL 16 (mouse)					11	27198057	50636094	Mouse
12910806	Pwbwq15_m	post-weaning body weight QTL 15 (mouse)					11	27198057	50636094	Mouse
12910801	Pwbwq14_m	post-weaning body weight QTL 14 (mouse)					11	27198057	50636094	Mouse
27226762	Feml21_m	femur length 21, 16 week (mouse)					11	11750000	65990826	Mouse
4141470	Egq4_m	early growth QTL 4 (mouse)			Not determined			12268637	68500330	Mouse
1301426	Desp2_m	despair 2 (mouse)			Not determined		11	28708581	62708700	Mouse
13524844	Ppiq9_m	prepulse inhibition QTL 9 (mouse)					11	9049997	35077325	Mouse
4142109	W10q2_m	weight 10 weeks QTL 2 (mouse)			Not determined			12268637	68500330	Mouse
12910817	Pwgrq20_m	post-weaning growth rate QTL 20 (mouse)					11	27198057	50636094	Mouse
1301814	Bbaa7_m	B.burgdorferi-associated arthritis 7 (mouse)			Not determined		11	26011780	44264695	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	3950000	88890826	Mouse
10412216	Eae44_m	experimental allergic encephalomyelitis susceptibility 44 (mouse)			Not determined		11	12268637	39950840	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	3950000	94890826	Mouse
12910818	Ogrq5_m	overall growth rate QTL 5 (mouse)					11	27198057	50636094	Mouse
26884401	Huml4_m	humerus length 4, 10 week (mouse)					11	11550000	68490826	Mouse
10053687	Eae6_m	susceptibility to experimental allergic encephalomyelitis 6 (mouse)			Not determined		11	17781966	68500330	Mouse
27226798	Scvln18_m	sacral vertebrae length 2, 16 week (mouse)					11	3250000	60690826	Mouse
4141582	Lgaq1_m	late growth adjusted QTL 1 (mouse)			Not determined			12268637	68500330	Mouse
4141966	Tailq1_m	tail length QTL 1 (mouse)			Not determined			12268637	68500330	Mouse
1558945	Orgwq8_m	organ weight QTL 8 (mouse)			Not determined		11	17056175	67078411	Mouse
4142216	Lgq1_m	late growth QTL 1 (mouse)			Not determined			12268637	68500330	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6880277	89019734	Mouse
14746971	Manh70_m	mandible shape 70 (mouse)					11	19905890	53905890	Mouse
13524848	Ppiq7_m	prepulse inhibition QTL 7 (mouse)					11	28569147	62569147	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12268637	118022724	Mouse
26884446	Sklq10_m	skull length QTL 10, 10 week (mouse)					11	3250000	62890826	Mouse
4141047	Nilac1_m	nicotine induced locomotor activity 1 (mouse)			Not determined		11	9011780	43011942	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21807364	95881231	Mouse
1559002	Lmrq4_m	Leishmania major resistance QTL 4 (mouse)			Not determined		11	12268637	69684947	Mouse
1300938	Bulb3_m	bulb size 3 (mouse)			Not determined		11	18578616	52578716	Mouse
1357518	Tgyl1_m	triglyceride level 1 (mouse)			Not determined		11	6880277	33916219	Mouse
4142308	W6q3_m	weight 6 weeks QTL 3 (mouse)			Not determined		11	12268637	68500330	Mouse
1357640	Orq2_m	ovulation rate QTL 2 (mouse)			Not determined		11	12268637	68500330	Mouse
1300599	Cocrb11_m	cocaine related behavior 11 (mouse)			Not determined		11	2670355	36671472	Mouse
1357437	Epfq4_m	epididymal fat pad weight QTL 4 (mouse)			Not determined		11	12268637	68500330	Mouse
4141398	Tgq22_m	triglyceride QTL 22 (mouse)			Not determined			21163406	55163406	Mouse
27226741	Metcl5_m	metatarsal-calcaneal length 5, 5 week (mouse)					11	4650000	46290827	Mouse
1300607	Tnbs2_m	tri-nitrobenzene sulfonic acid susceptible 2 (mouse)			Not determined		11	24898052	35126680	Mouse
1300990	Bits3_m	bitterness sensitivity 3 (mouse)			Not determined		11	8372121	42372260	Mouse
27226738	Metcl11_m	metatarsal-calcaneal length 11, 10 week (mouse)					11	8850000	61390826	Mouse
27226735	Metcl16_m	metatarsal-calcaneal length 16, 16 week (mouse)					11	5250000	35090827	Mouse
12801459	Leuf1_m	leukocyte filtration 1 (mouse)					11	18578616	52578716	Mouse
1300579	Thypr1_m	thymocyte proliferative response 1 (mouse)			Not determined		11	19282577	53282715	Mouse
10044008	Hbnr15_m	Heligmosomoides bakeri nematode resistance 15 (mouse)			Not determined		11	227052	34227232	Mouse
12801457	Intmrm2_m	intima/media ratio modifier 2 (mouse)					11	18578616	52578716	Mouse
12801460	Intim2_m	intima modifier 2 (mouse)					11	18578616	52578716	Mouse
27095909	Scvln6_m	sacral vertebrae length 2, 5 week (mouse)					11	3250000	44090827	Mouse
4141127	W3q4_m	weight 3 weeks QTL 4 (mouse)			Not determined			12268637	68500330	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19124204	96897826	Mouse
13463479	Mchq19_m	mean corpuscular hemoglobin QTL 19 (mouse)					11	10951232	44951464	Mouse
25394552	Skmw69_m	skeletal muscle weight 69, TA (mouse)					11	29699029	32329535	Mouse
27095904	Scvln12_m	sacral vertebrae length 2, 10 week (mouse)					11	3250000	34495048	Mouse
13463472	Mcvq15_m	mean corpuscular volume QTL 15 (mouse)					11	10951232	44951464	Mouse
26884453	Sklq16_m	skull length QTL 16, 16 week (mouse)					11	3250000	72690826	Mouse
10044006	Hbnr13_m	Heligmosomoides bakeri nematode resistance 13 (mouse)			Not determined		11	25772626	59772741	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_188995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006514924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK049252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL732388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000150255

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,700,370 - 30,706,147 (+)	Ensembl
GRCm38.p6 Ensembl	11	30,750,832 - 30,756,147 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255605

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,011 - 30,704,807 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255606

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,055 - 30,704,807 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255607

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,144 - 30,704,697 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255608

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,173 - 30,704,697 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255609

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,775 - 30,704,705 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255610

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,893 - 30,704,797 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255611

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,951 - 30,704,807 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255612

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,886 - 30,704,707 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255613

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,894 - 30,704,708 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255614

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,886 - 30,704,697 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255615

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,926 - 30,704,710 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255616

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,699,931 - 30,704,697 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000255617

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	30,700,365 - 30,704,705 (+)	Ensembl

RefSeq Acc Id:

NR_188995

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	30,700,832 - 30,706,128 (+)	NCBI

RGD ID:

15093897

Promoter ID:

EPDNEWNC_M1806

Type:

single initiation site

Name:

Gm12100_1

Description:

predicted gene 12100 [Source:MGI Symbol;Acc:MGI:3651586]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	30,750,814 - 30,750,874	EPDNEWNC

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000087474	Ensembl
MGD	MGI:3651586	ENTREZGENE
NCBI Gene	100381257	ENTREZGENE
PhenoGen	Gm12100	PhenoGen
RNAcentral	URS00009B8DB3	RNACentral
	URS00028539F2	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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