Gm53172 (predicted gene, 53172) - Rat Genome Database
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Summary
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Genomics
Variants
QTLs in Region (GRCm39)
Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
Reference Sequences
Additional Information
External Database Links
Nomenclature History
Gene: Gm53172 (predicted gene, 53172) Mus musculus
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Analyze
General
Array IDs
Symbol:
Gm53172
Name:
predicted gene, 53172
RGD ID:
39128782
MGI Page
MGI
Description:
Type:
ncrna
RefSeq Status:
VALIDATED
Previously known as:
LOC102640059; predicted gene Gm53172; uncharacterized LOC102640059
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly
Chr
Position (strand)
Source
Genome Browsers
JBrowse
NCBI
UCSC
Ensembl
GRCm39
14
31,651,545 - 31,665,058 (+)
NCBI
GRCm39
GRCm39
mm39
GRCm38
14
31,928,570 - 31,943,101 (+)
NCBI
GRCm38
GRCm38
mm10
GRCm38
Cytogenetic Map
14
B
NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Summary View
References
Genomics
.
Variants
.
Variants in Gm53172
408 total Variants
QTLs in Region (GRCm39)
1 to 10 of 19 rows
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The following
QTLs
overlap with this region.
Full Report
CSV
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Printer
Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589
Kdnw2_m
kidney weight 2 (mouse)
Not determined
14
20887473
121269804
Mouse
27226748
Femd8_m
femur midshaft diameter 8, 10 week (mouse)
14
13769273
46737457
Mouse
1357527
Epfpq1_m
epididymal fat percentage QTL 1 (mouse)
Not determined
14
21062450
71885801
Mouse
27226744
Metcl6_m
metatarsal-calcaneal length 6, 5 week (mouse)
14
30321957
52937457
Mouse
27226775
Tibl7_m
tibia length 7, 5 week (mouse)
14
30321957
48837457
Mouse
27226774
Tibl15_m
tibia length 15, 10 week (mouse)
14
30321957
87937436
Mouse
4142485
Modor2_m
modifier of ocular retardation 2 (mouse)
Not determined
14
24926248
58179769
Mouse
1301372
Sluc13_m
susceptibility to lung cancer 13 (mouse)
Not determined
14
18827604
52827726
Mouse
4141550
Dbm3_m
diabetes modifier 3 (mouse)
Not determined
5143473
39143596
Mouse
1300544
Hypn_m
hyperinsulinemia (mouse)
Not determined
14
15160616
49160765
Mouse
1301991
Wta3_m
weight adult 3 (mouse)
Not determined
14
3887473
37887650
Mouse
1300998
Cia17_m
collagen induced arthritis 17 (mouse)
Not determined
14
30335250
64335381
Mouse
4141864
Mrdq4_m
modifier of retinal degeneration QTL 4 (mouse)
Not determined
9923245
48765082
Mouse
10043886
Cia49_m
collagen induced arthritis QTL 49 (mouse)
Not determined
14
29996994
63997133
Mouse
1300779
Dyscalc4_m
dystrophic cardiac calcinosis 4 (mouse)
Not determined
14
12212871
46213007
Mouse
14746973
Manh76_m
mandible shape 76 (mouse)
14
22287217
56287217
Mouse
1300909
Ath13_m
atherosclerosis 13 (mouse)
Not determined
14
30335250
64335381
Mouse
27226752
Femd4_m
femur midshaft diameter 4, 5 week (mouse)
14
13769273
47237457
Mouse
13506929
Recrq10_m
recombination rate in male meiosis QTL 10 (mouse)
14
27921957
61137449
Mouse
1 to 10 of 19 rows
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Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
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Strain/Cell Line
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Tissue
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Geo Sample Id
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Unit
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Reference
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Sequence
Nucleotide Sequences
1 to 2 of 2 rows
3
5
10
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All Rows
RefSeq Transcripts
NR_171009
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
GenBank Nucleotide
AC113598
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
1 to 2 of 2 rows
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5
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All Rows
Reference Sequences
0 to 0 of 0 rows
3
5
10
20
100
All Rows
RefSeq Acc Id:
NR_171009
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Mouse Assembly
Chr
Position (strand)
Source
GRCm39
14
31,651,545 - 31,665,058 (+)
NCBI
0 to 0 of 0 rows
3
5
10
20
100
All Rows
Additional Information
External Database Links
1 to 4 of 4 rows
3
5
10
20
40
100
All Rows
Database
Acc Id
Source(s)
MGD
MGI:6473275
ENTREZGENE
NCBI Gene
LOC102640059
ENTREZGENE
PhenoGen
Gm53172
PhenoGen
RNAcentral
URS000212313B
RNACentral
1 to 4 of 4 rows
3
5
10
20
40
100
All Rows
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2021-05-18
Gm53172
predicted gene, 53172
Gm53172
predicted gene Gm53172
Symbol and/or name change
5135510
APPROVED
2020-11-24
Gm53172
predicted gene Gm53172
LOC102640059
uncharacterized LOC102640059
Symbol and/or name change
5135510
APPROVED