Advanced Search (OLGA)

Gene: LOC105376819 (uncharacterized LOC105376819) Homo sapiens

Analyze

Symbol:

LOC105376819

Name:

uncharacterized LOC105376819

RGD ID:

38608677

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	19,484,520 - 19,531,787 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
Cytogenetic Map	1	p36.13	NCBI
CHM1_1	1	19,935,984 - 19,967,569 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	19,307,973 - 19,355,223 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC105376819
7 total Variants

QTLs in Region (GRCh38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298451	OSTEAR17_H	Osteoarthritis QTL 17 (human)	2.4	0.0004	Joint/bone inflammation	osteoarthritis	11	1	25188105	Human
597464799	GWAS1560873_H	hypothyroidism QTL GWAS1560873 (human)		9e-11	hypothyroidism		1	19509727	19509728	Human
597590166	GWAS1647026_H	goiter QTL GWAS1647026 (human)		1e-22	goiter		1	19517082	19517083	Human
597595927	GWAS1652787_H	thyroid disease, drug use measurement QTL GWAS1652787 (human)		4e-18	thyroid disease, drug use measurement		1	19521118	19521119	Human
597459799	GWAS1555873_H	thyroid stimulating hormone measurement QTL GWAS1555873 (human)		6e-34	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19514680	19514681	Human
1298463	BP9_H	Blood pressure QTL 9 (human)	3.9		Blood pressure	hypertension susceptibility	1	1	25188105	Human
597590290	GWAS1647150_H	Thyrotoxicosis QTL GWAS1647150 (human)		2e-29	Thyrotoxicosis		1	19514680	19514681	Human
597595987	GWAS1652847_H	thyroid disease QTL GWAS1652847 (human)		1e-13	thyroid disease		1	19521118	19521119	Human
1576329	MYI9_H	Myocardial infarction susceptibility QTL 9 (human)	12		Myocardial infarction susceptibility	early-onset	1	7585503	33585503	Human
597587722	GWAS1644582_H	goiter QTL GWAS1644582 (human)		4e-11	goiter		1	19517082	19517083	Human
596956737	GWAS1076256_H	hyperthyroidism QTL GWAS1076256 (human)		7e-13	hyperthyroidism		1	19512250	19512251	Human
596975296	GWAS1094815_H	thyroid stimulating hormone measurement QTL GWAS1094815 (human)		3e-105	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19517082	19517083	Human
597587846	GWAS1644706_H	Toxic Nodular Goiter QTL GWAS1644706 (human)		1e-21	Toxic Nodular Goiter		1	19517082	19517083	Human
597370048	GWAS1466122_H	hormone measurement, thyroid stimulating hormone measurement QTL GWAS1466122 (human)		3e-14	hormone measurement, thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19514680	19514681	Human
597458439	GWAS1554513_H	thyroid stimulating hormone measurement QTL GWAS1554513 (human)		3e-105	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19517082	19517083	Human
597462016	GWAS1558090_H	thyroid stimulating hormone measurement QTL GWAS1558090 (human)		7e-27	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19497011	19497012	Human
1576325	MYI1_H	Myocardial infarction susceptibility QTL 1 (human)	11.68	1e-12	Myocardial infarction susceptibility	early-onset	1	7585503	33585503	Human
597587900	GWAS1644760_H	multinodular goiter QTL GWAS1644760 (human)		3e-25	multinodular goiter		1	19514680	19514681	Human
597370040	GWAS1466114_H	hormone measurement, thyroid stimulating hormone measurement QTL GWAS1466114 (human)		4e-21	hormone measurement, thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19514680	19514681	Human
597471480	GWAS1567554_H	thyroid stimulating hormone measurement QTL GWAS1567554 (human)		2e-72	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19512621	19512622	Human
597466618	GWAS1562692_H	hyperthyroidism QTL GWAS1562692 (human)		6e-10	hyperthyroidism		1	19512621	19512622	Human
597590329	GWAS1647189_H	multinodular goiter QTL GWAS1647189 (human)		6e-14	multinodular goiter		1	19514680	19514681	Human
597506167	GWAS1602241_H	thyroid stimulating hormone measurement QTL GWAS1602241 (human)		8e-271	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19514680	19514681	Human
597587636	GWAS1644496_H	nontoxic goiter QTL GWAS1644496 (human)		4e-16	nontoxic goiter		1	19517082	19517083	Human
597358257	GWAS1454331_H	thyroid stimulating hormone measurement QTL GWAS1454331 (human)		0.0000003	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19501286	19501287	Human
1643380	BW316_H	Body weight QTL 316 (human)	2.62	0.0002	Body weight	BMI	1	7585503	33585503	Human
597587756	GWAS1644616_H	Toxic Nodular Goiter QTL GWAS1644616 (human)		2e-28	Toxic Nodular Goiter		1	19514680	19514681	Human
597590188	GWAS1647048_H	nontoxic goiter QTL GWAS1647048 (human)		1e-23	nontoxic goiter		1	19517082	19517083	Human
597512110	GWAS1608184_H	sex hormone-binding globulin measurement QTL GWAS1608184 (human)		4e-08	sex hormone-binding globulin measurement		1	19493625	19493626	Human
597438639	GWAS1534713_H	thyroid stimulating hormone measurement QTL GWAS1534713 (human)		9e-09	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19518785	19518786	Human
597360239	GWAS1456313_H	hypothyroidism QTL GWAS1456313 (human)		8e-09	hypothyroidism		1	19512621	19512622	Human
597590251	GWAS1647111_H	multinodular goiter QTL GWAS1647111 (human)		2e-43	multinodular goiter		1	19514680	19514681	Human
597457962	GWAS1554036_H	hyperthyroidism QTL GWAS1554036 (human)		7e-13	hyperthyroidism		1	19512250	19512251	Human
596987043	GWAS1106562_H	thyroid stimulating hormone measurement QTL GWAS1106562 (human)		6e-34	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19514680	19514681	Human
597587241	GWAS1644101_H	thyroid disease, drug use measurement QTL GWAS1644101 (human)		1e-14	thyroid disease, drug use measurement		1	19521118	19521119	Human
597590310	GWAS1647170_H	Toxic Nodular Goiter QTL GWAS1647170 (human)		3e-47	Toxic Nodular Goiter		1	19517082	19517083	Human
597375394	GWAS1471468_H	thyroid volume QTL GWAS1471468 (human)		1e-14	thyroid volume	thyroid gland measurement (CMO:0002388)	1	19516860	19516861	Human
597380384	GWAS1476458_H	thyroid volume QTL GWAS1476458 (human)		3e-18	thyroid volume	thyroid gland measurement (CMO:0002388)	1	19512621	19512622	Human
597370407	GWAS1466481_H	hormone measurement, thyroid stimulating hormone measurement QTL GWAS1466481 (human)		1e-08	hormone measurement, thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19514680	19514681	Human
597589475	GWAS1646335_H	thyroid disease QTL GWAS1646335 (human)		7e-13	thyroid disease		1	19523867	19523868	Human
596957419	GWAS1076938_H	thyroid stimulating hormone measurement QTL GWAS1076938 (human)		7e-27	thyroid stimulating hormone measurement	blood thyroid stimulating hormone level (CMO:0001247)	1	19497011	19497012	Human

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001737920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007065522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007069926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007069927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007069928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007069929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_947019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_947020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL359199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_001737920

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	19,500,221 - 19,531,787 (+)	NCBI

Sequence:

show sequence

TCTCAAACTCCTGGACTCAAGCAAGCCTCCTACCTCGGCCTCCTGAAGTGTTGGGATTACAGGC
ATGAGCCACGGTGCACAGCAAGAGCTTTAACCTTAATGACCATTCATTCTCTACCCCACATTAC
CTACAACTGATACAGATTGGGTTTTTCTGGTACCTCTACCTGGAAGGAGATGAGAGGGCAGATC
TTTCAACATAATAATTCCCCAAAGATCTACAAGAACCTATTCATATTATTAAGATATTGCCTGC
TCCTGCAGAGGGCTGCTGCCATGTCATGAGCACTCTCAAGCAGCTCTAGCGAGGGGTCATGTCA
TGAGGAACTGAGACCTTCTGCCAATAGCTGTGTGAATGAGCCATCATGGAGGCAGGTCCTCCAG
CCCCAGTCAAGCCTTCAGATGATGGCAGCCCCAGCTGATGATTTGACTGCAAACTCTCATGCAA
CCAGGAATAAGAACCACTCAGCAGAACCACTCCCAATTTCCTGACCCACAGAAACTGTGAGATA
AATAAATATTGCTTTAAGCTGCTGTGCTTAGG

hide sequence

RefSeq Acc Id:

XR_007065522

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	19,484,520 - 19,513,081 (+)	NCBI

RefSeq Acc Id:

XR_007069926

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	19,307,973 - 19,336,652 (+)	NCBI

RefSeq Acc Id:

XR_007069927

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	19,323,664 - 19,349,807 (+)	NCBI

RefSeq Acc Id:

XR_007069928

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	19,323,664 - 19,355,223 (+)	NCBI

RefSeq Acc Id:

XR_007069929

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	19,323,664 - 19,355,223 (+)	NCBI

RefSeq Acc Id:

XR_947019

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	19,500,221 - 19,526,381 (+)	NCBI

Sequence:

show sequence

TCTCAAACTCCTGGACTCAAGCAAGCCTCCTACCTCGGCCTCCTGAAGTGTTGGGATTACAGGC
ATGAGCCACGGTGCACAGCAAGAGCTTTAACCTTAATGACCATTCATTCTCTACCCCACATTAC
CTACAACTGATACAGCATGCGAAGAGGGTCTTTGCTTACCCTTCACCTTCCACCATGATTATTG
GGTTTTTCTGGTACCTCTACCTGGAAGGAGATGAGAGGGCAGATCTTTCAACATAATAATTCCC
CAAAGATCTACAAGAACCTATTCATATTATTAAGATTAACCCTGTGAAGTGGGCATTATAATGA
TCCACAATTTCCATGAGGGAGTTGAAGCCCAATGGAGTTGAGCAACTTGCTGAAGGTCACACAG
CTCGTAAGTCACAGAGCCAAGATTCAAACCCAGACACTCAACTCCAGGATCCACGTCTCTATCT
TTTTAAAGCCCAGTGACTCCACAAACCAGCTCAAAGCCACTCCGCTGGATGATGCCTAAGATAC
CCTTCAGTCTTCAAGTGTGTCAGCCTATGAGTAA

hide sequence

RefSeq Acc Id:

XR_947020

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	19,500,221 - 19,531,787 (+)	NCBI

Sequence:

show sequence

TCTCAAACTCCTGGACTCAAGCAAGCCTCCTACCTCGGCCTCCTGAAGTGTTGGGATTACAGGC
ATGAGCCACGGTGCACAGCAAGAGCTTTAACCTTAATGACCATTCATTCTCTACCCCACATTAC
CTACAACTGATACAGATTGGGTTTTTCTGGTACCTCTACCTGGAAGGAGATGAGAGGGCAGATC
TTTCAACATAATAATTCCCCAAAGATCTACAAGAACCTATTCATATTATTAAGATTAACCCTGT
GAAGTGGGCATTATAATGATCCACAATTTCCATGAGGGAGTTGAAGCCCAATGGAGTTGAGCAA
CTTGCTGAAGGTCACACAGCTCGTAAGTCACAGAGCCAAGATTCAAACCCAGACACTCAACTCC
AGGATCCACGTCTCTATCTTTTTAAAGCCCAGTGACTCCACAAACCAGCTCAAAGCCACTCCGC
TGGATGATGCCTAAGATACCCTTCAGTCTTCAAGTGTGTCAGCCTATGAGTAATAGTCTGATTG
CCTGCTCCTGCAGAGGGCTGCTGCCATGTCATGAGCACTCTCAAGCAGCTCTAGCGAGGGGTCA
TGTCATGAGGAACTGAGACCTTCTGCCAATAGCTGTGTGAATGAGCCATCATGGAGGCAGGTCC
TCCAGCCCCAGTCAAGCCTTCAGATGATGGCAGCCCCAGCTGATGATTTGACTGCAAACTCTCA
TGCAACCAGGAATAAGAACCACTCAGCAGAACCACTCCCAATTTCCTGACCCACAGAAACTGTG
AGATAAATAAATATTGCTTTAAGCTGCTGTGCTTAGG

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	LOC105376819	COSMIC
GTEx	LOC105376819	GTEx
Human Proteome Map	LOC105376819	Human Proteome Map
NCBI Gene	LOC105376819	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message