ATF1P1 (activating transcription factor 1 pseudogene 1) - Rat Genome Database

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Gene: ATF1P1 (activating transcription factor 1 pseudogene 1) Homo sapiens
Analyze
Symbol: ATF1P1
Name: activating transcription factor 1 pseudogene 1
RGD ID: 3539572
HGNC Page HGNC:37691
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: ATF1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38692,887,267 - 92,888,058 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl692,887,251 - 92,888,581 (-)EnsemblGRCh38hg38GRCh38
GRCh37693,596,985 - 93,597,776 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36693,653,706 - 93,654,903 (-)NCBINCBI36Build 36hg18NCBI36
Celera694,017,738 - 94,018,529 (-)NCBICelera
Cytogenetic Map6q16.1NCBI
HuRef690,816,605 - 90,817,396 (-)NCBIHuRef
CHM1_1693,694,337 - 93,695,128 (-)NCBICHM1_1
T2T-CHM13v2.0694,099,259 - 94,100,051 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:28
Interacting mature miRNAs:28
Transcripts:ENST00000406040
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-154984  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37693,598,373 - 93,598,673UniSTSGRCh37
Build 36693,655,094 - 93,655,394RGDNCBI36
Celera694,019,126 - 94,019,426RGD
Cytogenetic Map6q16.1UniSTS
HuRef690,817,993 - 90,818,293UniSTS
TNG Radiation Hybrid Map645371.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 1 1 1 1 1 2 1
Below cutoff 39 6 9 99 22 1 144 29 16 4 231 10 98 4 77

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000406040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl692,887,251 - 92,888,581 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ATF1P1 COSMIC
Ensembl Genes ENSG00000219387 Ensembl
GTEx ENSG00000219387 GTEx
HGNC ID HGNC:37691 ENTREZGENE
Human Proteome Map ATF1P1 Human Proteome Map
NCBI Gene 100128159 ENTREZGENE