GAPDHP39 (glyceraldehyde 3 phosphate dehydrogenase pseudogene 39) - Rat Genome Database

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Gene: GAPDHP39 (glyceraldehyde 3 phosphate dehydrogenase pseudogene 39) Homo sapiens
Analyze
Symbol: GAPDHP39
Name: glyceraldehyde 3 phosphate dehydrogenase pseudogene 39
RGD ID: 3457159
HGNC Page HGNC:37796
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: GAPDH  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383138,777,760 - 138,779,011 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3138,777,832 - 138,778,810 (+)EnsemblGRCh38hg38GRCh38
GRCh373138,496,602 - 138,497,853 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363139,976,134 - 139,980,372 (+)NCBINCBI36Build 36hg18NCBI36
Celera3136,923,047 - 136,924,298 (+)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3135,871,868 - 135,873,119 (+)NCBIHuRef
CHM1_13138,460,608 - 138,461,859 (+)NCBICHM1_1
T2T-CHM13v2.03141,518,478 - 141,519,729 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in GAPDHP39
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:342
Count of miRNA genes:321
Interacting mature miRNAs:337
Transcripts:ENST00000481866
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 12 7 7 20 7 3 7 6 16 6 1 2 1
Below cutoff 541 576 456 119 523 75 1007 407 900 115 410 508 45 243 555

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000481866
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3138,777,832 - 138,778,810 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC GAPDHP39 COSMIC
Ensembl Genes ENSG00000239207 Ensembl
GTEx ENSG00000239207 GTEx
HGNC ID HGNC:37796 ENTREZGENE
Human Proteome Map GAPDHP39 Human Proteome Map
NCBI Gene 100128589 ENTREZGENE