LOC130057076 (ATAC-STARR-seq lymphoblastoid active region 9417) - Rat Genome Database

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Gene: LOC130057076 (ATAC-STARR-seq lymphoblastoid active region 9417) Homo sapiens
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Symbol: LOC130057076
Name: ATAC-STARR-seq lymphoblastoid active region 9417
RGD ID: 329834464
Description: This genomic sequence represents an accessible chromatin region that was validated as an enhancer based on its ability to activate an origin of replication minimal core promoter by the ATAC-STARR-seq (assay for transposase-accessible chromatin with self-transcribing active regulatory region sequencing) massively parallel reporter assay (MPRA) in GM12878 lymphoblastoid cells. [provided by RefSeq, May 2023]
Type: biological-region
RefSeq Status: REVIEWED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381552,077,162 - 52,077,241 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371552,369,359 - 52,369,438 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.01549,885,778 - 49,885,857 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:35858748  



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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
RefSeq Transcripts NG_191497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC023906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
COSMIC LOC130057076 COSMIC
GTEx LOC130057076 GTEx
Human Proteome Map LOC130057076 Human Proteome Map
NCBI Gene LOC130057076 ENTREZGENE