LOC129929517 (ATAC-STARR-seq lymphoblastoid silent region 322) - Rat Genome Database

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Gene: LOC129929517 (ATAC-STARR-seq lymphoblastoid silent region 322) Homo sapiens
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Symbol: LOC129929517
Name: ATAC-STARR-seq lymphoblastoid silent region 322
RGD ID: 329408592
Description: This genomic sequence represents an accessible chromatin region that was validated as a silencer based on its ability to repress an origin of replication minimal core promoter by the ATAC-STARR-seq (assay for transposase-accessible chromatin with self-transcribing active regulatory region sequencing) massively parallel reporter assay (MPRA) in GM12878 lymphoblastoid cells. [provided by RefSeq, May 2023]
Type: biological-region
RefSeq Status: REVIEWED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,013,249 - 16,013,508 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37116,339,744 - 16,340,003 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.0115,454,560 - 15,454,819 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:35858748  



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1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597491885GWAS1587959_HJT interval QTL GWAS1587959 (human)2e-11heart electrical impulse conduction trait (VT:2000017)heart electrical conduction measurement (CMO:0000230)11601327716013278Human
597511629GWAS1607703_Helectrocardiography QTL GWAS1607703 (human)3e-13electrocardiography11601327716013278Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597511628GWAS1607702_Helectrocardiography QTL GWAS1607702 (human)1e-17electrocardiography11601327716013278Human
597381178GWAS1477252_Hprostate carcinoma, breast carcinoma, ovarian carcinoma QTL GWAS1477252 (human)7e-09mammary gland integrity trait (VT:0010552)11601327716013278Human
597511630GWAS1607704_Helectrocardiography QTL GWAS1607704 (human)5e-20electrocardiography11601327716013278Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human

1 to 10 of 10 rows





RefSeq Transcripts NG_162574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL355994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
COSMIC LOC129929517 COSMIC
GTEx LOC129929517 GTEx
Human Proteome Map LOC129929517 Human Proteome Map
NCBI Gene LOC129929517 ENTREZGENE