LOC129394932 (small ribosomal subunit protein uS2B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC129394932 (small ribosomal subunit protein uS2B) Pan paniscus
Analyze
Symbol: LOC129394932
Name: small ribosomal subunit protein uS2B
RGD ID: 329347451
Description: ENCODES a protein that exhibits laminin binding (inferred); laminin receptor activity (inferred); structural constituent of ribosome (inferred); INVOLVED IN cell adhesion (inferred); ribosomal small subunit assembly (inferred); translation (inferred); FOUND IN cytoplasm (inferred); cytosolic small ribosomal subunit (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein SA
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,929,994 - 39,931,068 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12039,923,101 - 39,924,170 (+)NCBINHGRI_mPanPan1


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_055104972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_055104972   ⟹   XP_054960947
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22139,929,994 - 39,931,068 (+)NCBI
NHGRI_mPanPan12039,923,101 - 39,924,170 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054960947 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037729.1
RefSeq Acc Id: XP_054960947   ⟸   XM_055104972
- UniProtKB: A0A2R9C7G6 (UniProtKB/TrEMBL)
Protein Domains
Small ribosomal subunit protein uS2 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041611 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060631.1 UniProtKB/TrEMBL
InterPro 40S_ribosomal_SA UniProtKB/TrEMBL
  40S_SA_C UniProtKB/TrEMBL
  Ribosomal_S2 UniProtKB/TrEMBL
  Ribosomal_S2_CS UniProtKB/TrEMBL
  Ribosomal_S2_euk UniProtKB/TrEMBL
  Ribosomal_S2_euk/arc UniProtKB/TrEMBL
  Ribosomal_S2_flav_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC129394932 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN SA UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN SA-RELATED UniProtKB/TrEMBL
Pfam 40S_SA_C UniProtKB/TrEMBL
  Ribosomal_S2 UniProtKB/TrEMBL
PRINTS RIBOSOMALS2 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S2_1 UniProtKB/TrEMBL
  RIBOSOMAL_S2_2 UniProtKB/TrEMBL
Superfamily-SCOP Ribosomal protein S2 UniProtKB/TrEMBL
UniProt A0A2R9C7G6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC129394932  small ribosomal subunit protein uS2B  LOC129394932  40S ribosomal protein SA  Symbol and/or name change 5135510 APPROVED