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Gene: FBXO47 (F-box protein 47) Pan paniscus

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Symbol:

FBXO47

Name:

F-box protein 47

RGD ID:

329345265

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

F-box only protein 47

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO47 (F-box protein 47)	NCBI	Ortholog
Mus musculus (house mouse):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	25,982,087 - 26,016,957 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	27,865,607 - 27,898,093 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	17	18,577,948 - 18,609,177 (+)	Ensembl	panpan1.1		panPan2

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

FBXO47
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	25,982,087 - 26,016,957 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	27,865,607 - 27,898,093 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	17	18,577,948 - 18,609,177 (+)	Ensembl	panpan1.1		panPan2

FBXO47
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	38,936,432 - 38,967,403 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	38,936,432 - 38,967,403 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	37,092,685 - 37,123,656 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	34,346,244 - 34,377,181 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	33,753,667 - 33,784,641 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	32,887,838 - 32,919,330 (-)	NCBI		HuRef
CHM1_1	17	37,327,988 - 37,359,377 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	39,799,563 - 39,831,257 (-)	NCBI		T2T-CHM13v2.0

Fbxo47
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	97,741,137 - 97,775,240 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	97,744,652 - 97,774,980 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	97,850,311 - 97,884,386 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	97,853,826 - 97,884,154 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	97,715,621 - 97,745,468 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	97,669,916 - 97,700,244 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	98,622,636 - 98,653,057 (-)	NCBI		MGSCv36	mm8
Celera	11	107,503,352 - 107,533,193 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	61.14	NCBI

Fbxo47
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	83,331,750 - 83,376,669 (-)	NCBI		GRCr8
mRatBN7.2	10	82,849,514 - 82,880,337 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	82,849,730 - 82,879,538 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	85,798,987 - 85,829,770 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	85,799,203 - 85,825,735 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	85,587,756 - 85,617,207 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	86,607,280 - 86,637,847 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	81,604,326 - 81,633,983 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

Fbxo47
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	13,940,470 - 13,962,663 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	13,939,786 - 13,967,049 (-)	NCBI	ChiLan1.0	ChiLan1.0

FBXO47
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	23,310,242 - 23,337,280 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	23,310,522 - 23,334,001 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	22,781,951 - 22,808,961 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	24,104,869 - 24,131,946 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	24,105,148 - 24,128,667 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	22,876,965 - 22,903,952 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	23,137,812 - 23,164,979 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	23,262,943 - 23,289,966 (+)	NCBI		UU_Cfam_GSD_1.0

Fbxo47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	22,739,818 - 22,763,682 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	14,311,967 - 14,335,172 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	14,311,978 - 14,331,536 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO47
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	23,181,727 - 23,209,338 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	23,181,738 - 23,210,173 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

FBXO47
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	67,223,861 - 67,257,997 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	67,229,126 - 67,253,642 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	38,220,112 - 38,249,956 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fbxo47
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	3,807,526 - 3,833,451 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	3,807,566 - 3,835,314 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_055101892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055101896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055101897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055101900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063599106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063599107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063599108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000053084 ⟹ ENSPPAP00000030225

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	18,577,948 - 18,609,177 (+)	Ensembl

RefSeq Acc Id:

XM_055101892 ⟹ XP_054957867

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	25,982,092 - 26,016,957 (+)	NCBI
NHGRI_mPanPan1	17	27,865,613 - 27,898,093 (+)	NCBI

RefSeq Acc Id:

XM_055101896 ⟹ XP_054957871

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	25,982,092 - 26,016,957 (+)	NCBI
NHGRI_mPanPan1	17	27,865,613 - 27,898,093 (+)	NCBI

RefSeq Acc Id:

XM_055101897 ⟹ XP_054957872

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	25,982,087 - 26,016,957 (+)	NCBI
NHGRI_mPanPan1	17	27,865,607 - 27,897,992 (+)	NCBI

RefSeq Acc Id:

XM_055101900 ⟹ XP_054957875

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	25,982,092 - 26,016,957 (+)	NCBI
NHGRI_mPanPan1	17	27,865,613 - 27,897,992 (+)	NCBI

RefSeq Acc Id:

XM_063599106 ⟹ XP_063455176

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	25,982,110 - 26,014,463 (+)	NCBI

RefSeq Acc Id:

XM_063599107 ⟹ XP_063455177

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	25,982,092 - 26,016,957 (+)	NCBI

RefSeq Acc Id:

XM_063599108 ⟹ XP_063455178

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	25,982,110 - 26,016,957 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_054957867	(Get FASTA)	NCBI Sequence Viewer
	XP_054957871	(Get FASTA)	NCBI Sequence Viewer
	XP_054957872	(Get FASTA)	NCBI Sequence Viewer
	XP_054957875	(Get FASTA)	NCBI Sequence Viewer
	XP_063455176	(Get FASTA)	NCBI Sequence Viewer
	XP_063455177	(Get FASTA)	NCBI Sequence Viewer
	XP_063455178	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000030225.1

Ensembl Acc Id:

ENSPPAP00000030225 ⟸ ENSPPAT00000053084

RefSeq Acc Id:	XP_054957872 ⟸ XM_055101897
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BKN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054957867 ⟸ XM_055101892
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054957871 ⟸ XM_055101896
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BKN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054957875 ⟸ XM_055101900
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063455177 ⟸ XM_063599107
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BKN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063455178 ⟸ XM_063599108
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BKN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063455176 ⟸ XM_063599106
- Peptide Label:	isoform X1

Protein Domains

F-box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000038111	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000053084.1	UniProtKB/TrEMBL
InterPro	F-box-like_dom_sf	UniProtKB/TrEMBL
	F-box_dom	UniProtKB/TrEMBL
	FBXO47	UniProtKB/TrEMBL
NCBI Gene	FBXO47	ENTREZGENE
PANTHER	F-BOX ONLY PROTEIN 47	UniProtKB/TrEMBL
	F-BOX ONLY PROTEIN 47	UniProtKB/TrEMBL
Pfam	F-box	UniProtKB/TrEMBL
PROSITE	FBOX	UniProtKB/TrEMBL
Superfamily-SCOP	F-box domain	UniProtKB/TrEMBL
UniProt	A0A2R9BKN9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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