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Gene: FBXO47 (F-box protein 47) Chlorocebus sabaeus

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Symbol:

FBXO47

Name:

F-box protein 47

RGD ID:

18570587

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

F-box only protein 47

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO47 (F-box protein 47)	NCBI	Ortholog
Mus musculus (house mouse):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo47 (F-box protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	67,223,861 - 67,257,997 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	67,229,126 - 67,253,642 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	38,220,112 - 38,249,956 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

FBXO47
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	67,223,861 - 67,257,997 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	67,229,126 - 67,253,642 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	38,220,112 - 38,249,956 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

FBXO47
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	38,936,432 - 38,967,403 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	38,936,432 - 38,967,403 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	37,092,685 - 37,123,656 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	34,346,244 - 34,377,181 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	33,753,667 - 33,784,641 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	32,887,838 - 32,919,330 (-)	NCBI		HuRef
CHM1_1	17	37,327,988 - 37,359,377 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	39,799,563 - 39,831,257 (-)	NCBI		T2T-CHM13v2.0

Fbxo47
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	97,741,137 - 97,775,240 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	97,744,652 - 97,774,980 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	97,850,311 - 97,884,386 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	97,853,826 - 97,884,154 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	97,715,621 - 97,745,468 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	97,669,916 - 97,700,244 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	98,622,636 - 98,653,057 (-)	NCBI		MGSCv36	mm8
Celera	11	107,503,352 - 107,533,193 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	61.14	NCBI

Fbxo47
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	83,331,750 - 83,376,669 (-)	NCBI		GRCr8
mRatBN7.2	10	82,849,514 - 82,880,337 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	82,849,730 - 82,879,538 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	85,798,987 - 85,829,770 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	85,799,203 - 85,825,735 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	85,587,756 - 85,617,207 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	86,607,280 - 86,637,847 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	81,604,326 - 81,633,983 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

Fbxo47
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	13,940,470 - 13,962,663 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	13,939,786 - 13,967,049 (-)	NCBI	ChiLan1.0	ChiLan1.0

FBXO47
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	25,982,087 - 26,016,957 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	27,865,607 - 27,898,093 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	17	18,577,948 - 18,609,177 (+)	Ensembl	panpan1.1		panPan2

FBXO47
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	23,310,242 - 23,337,280 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	23,310,522 - 23,334,001 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	22,781,951 - 22,808,961 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	24,104,869 - 24,131,946 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	24,105,148 - 24,128,667 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	22,876,965 - 22,903,952 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	23,137,812 - 23,164,979 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	23,262,943 - 23,289,966 (+)	NCBI		UU_Cfam_GSD_1.0

Fbxo47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	22,739,818 - 22,763,682 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	14,311,967 - 14,335,172 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	14,311,978 - 14,331,536 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO47
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	23,181,727 - 23,209,338 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	23,181,738 - 23,210,173 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Fbxo47
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	3,807,526 - 3,833,451 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	3,807,566 - 3,835,314 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in FBXO47
571 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
21	3	18	18	18	21	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008012889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008012890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008012891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008012892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008012894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008012895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000000682 ⟹ ENSCSAP00000015381

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	16	67,229,126 - 67,253,642 (+)	Ensembl

RefSeq Acc Id:

XM_008012889 ⟹ XP_008011080

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	67,223,861 - 67,254,537 (+)	NCBI
Vero_WHO_p1.0	NW_023666077	38,220,112 - 38,249,956 (+)	NCBI

Sequence:

show sequence

TCCATTCTTAGGGCCTACTCCTGTGCCTGGCCCAGAGCAGGCTTCAATAAATAGTTACAGAATG
AATGAAGAAATAAATTAATGAGAATTTAATCTTCTAGCCAGGAGGGGCTAACTAGAAAGATTTG
TCTTGACTCCATCTTGAGAGGCTGGAGACAGACATCTTCCCTTGATTCCAGACAGATTTATTAT
TTATGTGCTTATTTAGAGACCAGGAGAGGGGTGTGTGTGTGTGGGGGGGGGTCTCCCTATGTTG
CCCAGGCTGGTCTCGAACTCCTGGACTCAAGGGAGCCTCCCGCCTCGGCCTCCCAAAGTGTTGG
GATTACAGGCGTGAGCCACCGCACCGGCAAGACAGATTTAAAAAGCAATGTCTGGAGGTTTTTT
TCCATCAAAAGGTTTGATGAAACCCATTGTAACTTGCCCTTCTGGGGTTAGTGGGGGTGGGAGC
GACTCAAAAATTGTCTCAAAACTAGGTGAAGGGAAAGGCAGTGGAGCAGAGACGTGGCTCGCCG
CGTTCAGGATCTTGGGCTACACCCTCCCCTCCCCCACACCGTAACGGCTCCAGCCCCTTCCTGT
CTTCAGCTTGGCGCGAAGGGTGGCTGAGGCCTGAGTTTGGGCTCCAGGAACCTCGCACCGTTAA
TTATTCATGAGAAGAAGGGCACCATGGGAGCTGGCTCTCTTGCTATTGATAAGGGGGCGGTGGG
GGGCCGACTTCCCGCTAGGGCTCCTGGGAAGATCTACAATATTCATGAGGGAGGCGGGCTCTAC
GAGAGCTGAGGCTTCTTGCTATTCATGAGGGGGCGGGCCTCCTTCCCGCGTAGGCTCTTGGGAA
GATTCTACATTATTCTAGAGGCCACGGGGACACCTGGTGGGCAGGGCTGCAGCTCCGGAGCCTA
CGGGAGTCTGACCTTCCCGCTTCCTGGCGGGAAGATCTTGAGGAGATATTTTCTTTTCTAAACA
CTAAGAAATTTGAGGATGGTGGGGCAGAACGACTAACTGCCACTTTCCTGTGACTCTGTAGCCT
GAAAAGTGTCAAAATCTGTGGATAAATTTATGAGACAAGAAGAAGAATGGCATCCAGAACAAAT
ACCAATTTCACTTTGATTCCCAACCAGAAACTTAGACGTAGTAATCGTCAAACCAGCTGTTGTT
CCAAGACCCTTGGCTCAGGCTTTCAACCCATATCAACATTTGGAAATTTTAAAGCCTTACCATT
GGAAATATTCCAGATAATTTTAAAATATTTGTCAGTGAAGGATATCAGCATGCTAAGCATGGTG
TCCAAAACAGTCAGCCAACACATTATTAATTATATCTCAACCTCATCAGGAAGCAAAAGACTTT
TACTACAGGACTTTCATAACCTTGAGCTGCCTGACAGGAGACAAGACTCTGCTATCCTGGAGCA
CTACAGATCTCTAGGTCTACTGTTTAAAAGATGTACATTGCTGCTACCCACCAAGGAAAGGCTA
AAGTACATTCACAAGATACTCACAGAAGTTTCCTGCTTTAAATTCAATGGCTGTGCAGCTCCTA
TGCAGTGTTTAGGATTAACATGTTATGGCATGTTTTTACAGACCTTAACAGCAGGTTGGGATGA
ACTTGAGTGCCATCGCGTTTATAATTTCTTATGCGAACTGACTAATCTCTGCCGCAAGATGCAA
ATGGCTGTCTGCAGCAAACCAGGAAGTGCCCGAAAACTTGAGTTAAGGATCAGACTCTTCTGTA
GGAATGTCCTCCTTGATCATTGGACACATCGAAGTGATTCTGCTTTTTGGTTGACACGAATATT
AAAACCATGGCCAATGGTGAATCAGGCAAGATTACTGTATATCATCTTTGGGCCAGTATCTCCT
CAAGATGGACAGGTGGTTTGGCAGAAAATGATAGAAGAACCTACAGATGAATTCAGTCTGAAAG
GTTTGGCTGATGCCATTAAGTTACTATATGACGCTAGCACTAAAGAGTGGACAGCAGATGATGT
TATCAGTCTTGTAGATGAACTATCAGTGGTTCCCCATGAGTGGCTTCTAGAGAATAATGCACGT
CTCCTAATGCTAAGTGGAAACAACATCTGTTTCACTTTCATGGCTAGTAAAGCTGTGAATGGAC
GGACCATTGAACTGGCAAGGCTCATAGTCTTTTTGGCTTTGGTGTGTGAGAAAGAACTATACTG
CATGGATTGGACAGTTAAAATGATGCAAAAAGTCTGCAAAGTCTTTAGCACTCCAGTGGAAAGA
AATAACTTCCTGCAGAATGTGGCAAATGCATTTGCATGTGTTATAATGGAAATGCTGCAATCAA
TTATGTCTGGAGACCGTGATGAAGATGACAGAAGCTTTCTGAATTTGTTCCATCTTGTACATGC
TCAGGCTAACTTCCATAAAGAGGTCCTGTATTTGACCATGAATACTTCTCTGTCTGCCTAAATC
CTCAGAAAGCCTTGCCTTTAGAGAACCTCACTGAACTAATGATTAGAGGAGTGGTACTTTTTCA
CTCAAAAAATAGCATCCGTGGGACTTTTTATCATCTAAGTAACCTAAGAATTCAAAAGCTGTAT
AGAATTTTAGAAGCAACTACTTACATCGTTATTAATATAAAAATAACAGGCAAACTCAAGAATG
AACTGAGATTTCTTTGGAAAACAACCTCTGCCTCTCCAGGTTTTAGTCAACCTAACACCAAACC
AAAATAGAATGTTAGCTGTTCAAGAATCTGGGACCAGCCAACCTGTATGTGTGGATTTTTGAAG
CAAGAGAAAATTCCATTTTATAGTTAGACCCAAATTCACTAAATAGTATGTGTGTTCACTTTGT
TTAAGTTGTATAGACATAGCCCAGAATGTTTTGTGAAGATTTGCAATATGGTGTTTTGGAATGT
GTAGAATACAAATCACAGTTTTTACTACCTTCTTGGCATATGCTTACAAAGAACATTATATTTT
GTTCATGTTTTACATGAACTAACAGATAAAAAAGTATATGTGTATGTCTGTGTGTGTGTGTGTA
TATATATAGAGAGAGAGAGAGACAGACATATATTTCCTTCTTTAAGATAATCATACAGAAGGTC
TATACATACAGGAAGGTATATATTGTCTCAATACAATCAAATCTTTTACTAGGGATTCAAATAA
AATGTAGCAAATAAGAGAAAAACAAAATGAAAGAAAATAGCTATTCTGCTGCCAGAATAATCTT
TACAAATAGTTTTTACTTCTTCCTAAAGCTTTTCTCCCTCTCTTAAAAAGTGAGATTTGGCTGG
GTGCTGTGGCTCATGCCTGTAATCCCAGAAATTTTGGAGGCTGAGGCAGGAGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008011080	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000015381.1

RefSeq Acc Id:	XP_008011080 ⟸ XM_008012889
- UniProtKB:	A0A0D9S3E2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000015381 ⟸ ENSCSAT00000000682

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000002663	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000000682.1	UniProtKB/TrEMBL
InterPro	F-box-like_dom_sf	UniProtKB/TrEMBL
	F-box_dom	UniProtKB/TrEMBL
	FBXO47	UniProtKB/TrEMBL
NCBI Gene	FBXO47	ENTREZGENE
PANTHER	F-BOX ONLY PROTEIN 47	UniProtKB/TrEMBL
	PTHR34098	UniProtKB/TrEMBL
Pfam	F-box	UniProtKB/TrEMBL
PROSITE	FBOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF81383	UniProtKB/TrEMBL
UniProt	A0A0D9S3E2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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