GAPDHP38 (glyceraldehyde 3 phosphate dehydrogenase pseudogene 38) - Rat Genome Database

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Gene: GAPDHP38 (glyceraldehyde 3 phosphate dehydrogenase pseudogene 38) Homo sapiens
Analyze
Symbol: GAPDHP38
Name: glyceraldehyde 3 phosphate dehydrogenase pseudogene 38
RGD ID: 3277632
HGNC Page HGNC:37792
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: GAPDH  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,558,560 - 46,559,844 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,558,641 - 46,559,642 (+)EnsemblGRCh38hg38GRCh38
GRCh371947,061,817 - 47,063,101 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,750,862 - 51,754,739 (+)NCBINCBI36Build 36hg18NCBI36
Celera1943,865,334 - 43,866,617 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1943,486,859 - 43,488,150 (+)NCBIHuRef
CHM1_11947,063,659 - 47,064,950 (+)NCBICHM1_1
T2T-CHM13v2.01949,384,169 - 49,385,454 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:310
Count of miRNA genes:265
Interacting mature miRNAs:277
Transcripts:ENST00000503632
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 42 162 132 6 147 3 494 387 170 14 85 85 6 1 11 476
Below cutoff 1967 2505 1263 382 1254 236 3199 1605 3004 255 1112 1172 151 940 2092 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000503632
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1946,558,641 - 46,559,642 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC GAPDHP38 COSMIC
Ensembl Genes ENSG00000249210 Ensembl
GTEx ENSG00000249210 GTEx
HGNC ID HGNC:37792 ENTREZGENE
Human Proteome Map GAPDHP38 Human Proteome Map
NCBI Gene 729493 ENTREZGENE