EEF1A1P24 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 24) - Rat Genome Database

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Gene: EEF1A1P24 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 24) Homo sapiens
Analyze
Symbol: EEF1A1P24
Name: eukaryotic translation elongation factor 1 alpha 1 pseudogene 24
RGD ID: 3207652
HGNC Page HGNC:37897
Description: INTERACTS WITH chloropicrin
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: EEF1A1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38339,358,482 - 39,360,119 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl339,358,545 - 39,359,922 (+)EnsemblGRCh38hg38GRCh38
GRCh37339,399,973 - 39,401,610 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,375,040 - 39,376,736 (+)NCBINCBI36Build 36hg18NCBI36
Celera339,341,619 - 39,342,993 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef339,443,362 - 39,444,736 (+)NCBIHuRef
CHM1_1339,351,109 - 39,352,483 (+)NCBICHM1_1
T2T-CHM13v2.0339,371,405 - 39,373,042 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
chloropicrin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:107
Interacting mature miRNAs:107
Transcripts:ENST00000451469
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 1
Low 74 118 82 11 171 5 303 33 68 21 126 137 6 77 179
Below cutoff 2149 2535 1385 415 1302 263 3600 1726 3069 236 1139 1226 154 1095 2337 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000451469
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl339,358,545 - 39,359,922 (+)Ensembl
RefSeq Acc Id: XR_017484
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36339,375,040 - 39,376,736 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC EEF1A1P24 COSMIC
Ensembl Genes ENSG00000223668 Ensembl, ENTREZGENE
GTEx ENSG00000223668 GTEx
HGNC ID HGNC:37897 ENTREZGENE
Human Proteome Map EEF1A1P24 Human Proteome Map
NCBI Gene 645715 ENTREZGENE