PIP5K1P2 (phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: PIP5K1P2 (phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 2) Homo sapiens
Analyze
Symbol: PIP5K1P2
Name: phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 2
RGD ID: 3184211
HGNC Page HGNC:38068
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 2
Related Functional Gene: PIP5K1A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387159,231,003 - 159,235,323 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7159,231,435 - 159,233,377 (+)EnsemblGRCh38hg38GRCh38
GRCh377159,023,693 - 159,028,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367158,716,886 - 158,718,748 (+)NCBINCBI36Build 36hg18NCBI36
Celera7153,458,537 - 153,462,882 (+)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7152,763,776 - 152,768,121 (+)NCBIHuRef
CHM1_17159,032,069 - 159,036,414 (+)NCBICHM1_1
T2T-CHM13v2.07160,459,432 - 160,463,764 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27158,224,880 - 158,229,225 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:194
Count of miRNA genes:188
Interacting mature miRNAs:192
Transcripts:ENST00000437005
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559221SCL67_HSerum cholesterol level QTL 67 (human)2.980.002Lipid leveltriglyceride7141776251159345973Human
1559237SCL70_HSerum cholesterol level QTL 70 (human)3.520.002Lipid leveltriglyceride7141776251159345973Human
1578618SCL127_HSerum cholesterol level QTL 127 (human)3.7Lipid leveltriglyceride7141776251159345973Human
1559218SCL69_HSerum cholesterol level QTL 69 (human)3.410.002Lipid leveltriglyceride7141776251159345973Human
1559232SCL66_HSerum cholesterol level QTL 66 (human)2.980.002Lipid leveltriglyceride7141776251159345973Human
1559264SCL68_HSerum cholesterol level QTL 68 (human)3.10.002Lipid leveltriglyceride7141776251159345973Human
1559263SCL72_HSerum cholesterol level QTL 72 (human)3.25Lipid leveltriglyceride7141776251159345973Human
1559213SCL71_HSerum cholesterol level QTL 71 (human)3.46Lipid leveltriglyceride7141776251159345973Human
1578610SCL128_HSerum cholesterol level QTL 128 (human)2.2Lipid levelLDL cholesterol7141776251159345973Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
136 185 189 127 292 109 137 1 15 73 11 123 436 448 3 273 118 635 72 5

Sequence


Ensembl Acc Id: ENST00000437005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7159,231,435 - 159,233,377 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PIP5K1P2 COSMIC
Ensembl Genes ENSG00000229435 Ensembl
GTEx ENSG00000229435 GTEx
HGNC ID HGNC:38068 ENTREZGENE
Human Proteome Map PIP5K1P2 Human Proteome Map
NCBI Gene 100129824 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-19 PIP5K1P2  phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 2    phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 2  Symbol and/or name change 5135510 APPROVED