EEF1A1P29 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 29) - Rat Genome Database

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Gene: EEF1A1P29 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 29) Homo sapiens
Analyze
Symbol: EEF1A1P29
Name: eukaryotic translation elongation factor 1 alpha 1 pseudogene 29
RGD ID: 3077628
HGNC Page HGNC:37904
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: EEF1A1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X86,159,926 - 86,161,368 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX86,160,264 - 86,161,359 (-)EnsemblGRCh38hg38GRCh38
GRCh37X85,414,930 - 85,416,372 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X85,301,836 - 85,303,034 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX85,654,480 - 85,655,922 (-)NCBICelera
Cytogenetic MapXq21.2NCBI
HuRefX78,991,678 - 78,993,064 (-)NCBIHuRef
CHM1_1X85,308,490 - 85,309,932 (-)NCBICHM1_1
T2T-CHM13v2.0X84,591,151 - 84,592,593 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:162
Interacting mature miRNAs:166
Transcripts:ENST00000416082
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 84 85 88 28 251 24 180 22 61 49 132 131 4 31 89 1
Below cutoff 1901 2178 1189 314 1094 175 3284 1417 2446 227 991 1169 145 1034 2060 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000416082
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX86,160,264 - 86,161,359 (-)Ensembl
RefSeq Acc Id: XM_001717632
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36X85,301,836 - 85,303,034 (-)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC EEF1A1P29 COSMIC
Ensembl Genes ENSG00000215093 Ensembl
GTEx ENSG00000215093 GTEx
HGNC ID HGNC:37904 ENTREZGENE
Human Proteome Map EEF1A1P29 Human Proteome Map
NCBI Gene 100130211 ENTREZGENE