GAPDHP34 (glyceraldehyde 3 phosphate dehydrogenase pseudogene 34) - Rat Genome Database

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Gene: GAPDHP34 (glyceraldehyde 3 phosphate dehydrogenase pseudogene 34) Homo sapiens
Analyze
Symbol: GAPDHP34
Name: glyceraldehyde 3 phosphate dehydrogenase pseudogene 34
RGD ID: 2923289
HGNC Page HGNC:37786
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: GAPDH  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381336,740,041 - 36,740,923 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1336,740,041 - 36,740,863 (+)EnsemblGRCh38hg38GRCh38
GRCh371337,314,178 - 37,315,060 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361336,181,666 - 36,212,907 (+)NCBINCBI36Build 36hg18NCBI36
Celera1318,381,389 - 18,382,271 (+)NCBICelera
Cytogenetic Map13q13.3NCBI
HuRef1318,126,056 - 18,126,938 (+)NCBIHuRef
CHM1_11337,281,742 - 37,282,624 (+)NCBICHM1_1
T2T-CHM13v2.01335,959,551 - 35,960,433 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:102
Interacting mature miRNAs:103
Transcripts:ENST00000432112
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D13S933  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,340,018 - 37,340,279UniSTSGRCh37
Build 361336,238,018 - 36,238,279RGDNCBI36
Celera1318,407,229 - 18,407,490RGD
Cytogenetic Map13q13.3UniSTS
HuRef1318,151,895 - 18,152,156UniSTS
D13S994  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,301,303 - 37,301,445UniSTSGRCh37
Build 361336,199,303 - 36,199,445RGDNCBI36
Celera1318,368,510 - 18,368,652RGD
Cytogenetic Map13q13.3UniSTS
HuRef1318,113,165 - 18,113,307UniSTS
SHGC-9194  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371337,348,137 - 37,348,307UniSTSGRCh37
Build 361336,246,137 - 36,246,307RGDNCBI36
Celera1318,415,348 - 18,415,518RGD
Cytogenetic Map13q13.3UniSTS
HuRef1318,160,014 - 18,160,184UniSTS
Stanford-G3 RH Map13756.0UniSTS
NCBI RH Map13311.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 11 7 5 3 1 1 6
Below cutoff 411 563 139 25 46 2 546 301 240 41 236 187 23 119 465

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000432112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1336,740,041 - 36,740,863 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC GAPDHP34 COSMIC
Ensembl Genes ENSG00000235306 Ensembl, ENTREZGENE
GTEx ENSG00000235306 GTEx
HGNC ID HGNC:37786 ENTREZGENE
Human Proteome Map GAPDHP34 Human Proteome Map
NCBI Gene 646877 ENTREZGENE