AGKP1 (AGK pseudogene 1) - Rat Genome Database

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Gene: AGKP1 (AGK pseudogene 1) Homo sapiens
Analyze
Symbol: AGKP1
Name: AGK pseudogene 1
RGD ID: 2794508
HGNC Page HGNC:37661
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: acylglycerol kinase pseudogene 1; AGKY1
Related Functional Gene: AGK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y14,639,057 - 14,640,149 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY14,639,096 - 14,640,358 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y16,750,937 - 16,752,029 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y15,260,247 - 15,262,687 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX3,736,898 - 3,739,138 (+)NCBICelera
Cytogenetic MapYq11.221NCBI
HuRefY11,356,594 - 11,358,834 (+)NCBIHuRef
T2T-CHM13v2.0Y15,545,700 - 15,546,792 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:9847074   PMID:12815422  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:84
Interacting mature miRNAs:84
Transcripts:ENST00000455254
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 2 28 1 8 2 17 2 4 2 1
Below cutoff 335 252 360 115 110 69 644 222 1271 42 163 225 50 134 413

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000455254
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY14,639,096 - 14,640,358 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AGKP1 COSMIC
Ensembl Genes ENSG00000226555 Ensembl, ENTREZGENE
GTEx ENSG00000226555 GTEx
HGNC ID HGNC:37661 ENTREZGENE
Human Proteome Map AGKP1 Human Proteome Map
NCBI Gene 359793 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-06 AGKP1  AGK pseudogene 1  AGKP1  acylglycerol kinase pseudogene 1  Symbol and/or name change 19259463 PROVISIONAL