Idi1-ps1 (isopentenyl-diphosphate delta isomerase 1, pseudogene 1) - Rat Genome Database

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Gene: Idi1-ps1 (isopentenyl-diphosphate delta isomerase 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Idi1-ps1
Name: isopentenyl-diphosphate delta isomerase 1, pseudogene 1
RGD ID: 2320348
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: hypothetical LOC100361317; LOC100361317
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr857,439,868 - 7,441,027 (+)NCBIGRCr8
mRatBN7.252,656,161 - 2,657,460 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.052,038,463 - 2,040,102 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.052,039,721 - 2,040,663 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.451,980,655 - 1,983,138 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera52,278,394 - 2,280,206 (+)NCBICelera
Cytogenetic Map5q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
631551Vetf1Vascular elastic tissue fragility QTL 150.0001aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)522822265904428Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_003749880   ⟹   XP_003749928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.052,039,721 - 2,040,663 (+)NCBI
RefSeq Acc Id: XM_003753994   ⟹   XP_003754042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera52,278,807 - 2,279,749 (+)NCBI
RefSeq Acc Id: XM_006225166   ⟹   XP_006225228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera52,278,807 - 2,279,749 (+)NCBI
RefSeq Acc Id: XM_006237725   ⟹   XP_006237787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.052,039,721 - 2,040,663 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-42313 BioCyc
NCBI Gene 100361317 ENTREZGENE
PhenoGen Idi1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Idi1-ps1  isopentenyl-diphosphate delta isomerase 1, pseudogene 1  LOC100361317  hypothetical LOC100361317  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100361317  hypothetical LOC100361317      Symbol and Name status set to provisional 70820 PROVISIONAL