Symbol:
Sgms1os1
Name:
Sgms1 opposite strand transcript 1
RGD ID:
2315718
MGI Page
MGI
Description:
Acts upstream of or within positive regulation of myelination and regulation of gene expression. Orthologous to human SGMS1-AS1 (SGMS1 antisense RNA 1).
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Previously known as:
2700046G09Rik
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 19 32,366,616 - 32,368,584 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 19 32,364,797 - 32,372,888 (+) Ensembl GRCm39 Ensembl GRCm38 19 32,389,216 - 32,391,184 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 19 32,389,216 - 32,391,190 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 19 32,463,706 - 32,465,674 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 19 32,455,204 - 32,456,319 (+) NCBI MGSCv36 mm8 Celera 19 33,169,462 - 33,171,429 (+) NCBI Celera Cytogenetic Map 19 C1 NCBI cM Map 19 27.1 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Sgms1os1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 19 32,366,616 - 32,368,584 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 19 32,364,797 - 32,372,888 (+) Ensembl GRCm39 Ensembl GRCm38 19 32,389,216 - 32,391,184 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 19 32,389,216 - 32,391,190 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 19 32,463,706 - 32,465,674 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 19 32,455,204 - 32,456,319 (+) NCBI MGSCv36 mm8 Celera 19 33,169,462 - 33,171,429 (+) NCBI Celera Cytogenetic Map 19 C1 NCBI cM Map 19 27.1 NCBI
SGMS1-AS1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 50,624,951 - 50,631,636 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 50,623,466 - 50,676,367 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 52,384,711 - 52,391,396 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 10 q11.23 NCBI CHM1_1 10 52,666,531 - 52,673,216 (+) NCBI CHM1_1 T2T-CHM13v2.0 10 51,473,585 - 51,480,253 (+) NCBI T2T-CHM13v2.0
.
Predicted Target Of
Count of predictions: 49 Count of miRNA genes: 49 Interacting mature miRNAs: 49 Transcripts: ENSMUST00000181612 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
13506250 Renmq1_m renal mercury accumulation QTL 1 (mouse) 19 27385594 61385705 Mouse 10412251 Mnp_m modifier of Niemann Pick type C1 (mouse) Not determined 19 20234314 54234461 Mouse 1357596 Tgct3_m testicular germ cell tumor 3 (mouse) Not determined 19 21984091 32912719 Mouse 11039522 Tbbr4_m Trypanosoma brucei brucei response 4 (mouse) 19 5313326 39313470 Mouse 1301336 Alcp23_m alcohol preference locus 23 (mouse) Not determined 19 15912607 49912719 Mouse 1558876 W3q14_m weight 3 weeks QTL 14 (mouse) Not determined 19 22313326 53911504 Mouse 1302019 Pgia23_m proteoglycan induced arthritis 23 (mouse) Not determined 19 9787453 43787602 Mouse 1301633 Alcp24_m alcohol preference locus 24 (mouse) Not determined 19 15912607 49912719 Mouse 14928311 Manh85_m mandible shape 85 (mouse) 19 11914789 45914789 Mouse 1357568 Tgct4_m testicular germ cell tumor 4 (mouse) Not determined 19 27771985 35295381 Mouse 1301451 Ath16_m atherosclerosis 16 (mouse) Not determined 19 25426917 59427005 Mouse 1300683 Fembm7_m femoral bone morphometry 7 (mouse) Not determined 19 30141224 61420004 Mouse 4141659 Pbwg20_m postnatal body weight growth 20 (mouse) Not determined 19 21378705 55378928 Mouse 1301942 Pas13_m pulmonary adenoma susceptibility 13 (mouse) Not determined 19 30141231 61420004 Mouse 10413881 Moe2_m modifier of epilepsy 2 (mouse) 19 14923016 48923138 Mouse 1302004 Lfp2_m long free running period 2 (mouse) Not determined 19 18295162 52295381 Mouse 1300923 Bits4_m bitterness sensitivity 4 (mouse) Not determined 19 3323216 37323348 Mouse 12790634 Ebm1_m Epidermolysis Bullosa modifier 1 (mouse) 19 24988439 58988439 Mouse 1300856 Nobq2_m New Zealand obese QTL 2 (mouse) Not determined 19 30897880 61420004 Mouse 4141138 Femwf11_m femur work to failure 11 (mouse) Not determined 28140348 61420004 Mouse 1301410 Cd8mts6_m CD8 memory T cell subset 6 (mouse) Not determined 19 30141231 61420004 Mouse 4142343 Moen2_m modifier of engrailed QTL 2 (mouse) Not determined 19 20234314 54234461 Mouse 1302123 Tlsr8_m thymic lymphoma suppressor region 8 (mouse) Not determined 19 25136002 42388916 Mouse 4142406 Pbctlp1_m peripheral blood cytotoxic T lymphocyte percentage 1 (mouse) Not determined 1 32875174 Mouse 1300904 Chab5_m cholesterol absorption 5 (mouse) Not determined 19 1653764 35653927 Mouse 26884385 Skwq14_m skull length QTL 14, 16 week (mouse) 19 3250000 35877400 Mouse 1301800 Faq10_m fluctuating asymmetry QTL 10 (mouse) Not determined 19 3323216 37323348 Mouse 1300591 Pas3_m pulmonary adenoma susceptibility 3 (mouse) Not determined 19 3323216 37323348 Mouse 1302063 Eae19_m experimental allergic encephalomyelitis 19 (mouse) Not determined 19 18295162 52295381 Mouse 1302126 Skull26_m skull morphology 26 (mouse) Not determined 19 3323216 37323348 Mouse 1301228 Iba4_m induction of brown adipocytes 4 (mouse) Not determined 19 9305715 43305821 Mouse
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSMUST00000181612
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,366,589 - 32,368,590 (+) Ensembl GRCm38.p6 Ensembl 19 32,389,216 - 32,391,190 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000241028
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,366,589 - 32,368,705 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000245735
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,366,593 - 32,367,538 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000246029
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,366,593 - 32,368,591 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288473
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,364,967 - 32,368,652 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288474
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,364,938 - 32,368,585 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288475
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,364,980 - 32,368,590 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288476
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,364,797 - 32,367,538 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288477
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,365,953 - 32,368,585 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288478
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,366,588 - 32,368,590 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288479
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,366,593 - 32,368,587 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288480
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,366,817 - 32,368,587 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288481
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,365,903 - 32,367,538 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288482
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,365,909 - 32,367,541 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288483
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,366,815 - 32,367,538 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288484
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,366,820 - 32,367,538 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288485
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,365,915 - 32,366,413 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000288486
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 32,365,030 - 32,372,888 (+) Ensembl
RefSeq Acc Id:
NR_033198
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 32,366,616 - 32,368,584 (+) NCBI GRCm38 19 32,389,216 - 32,391,184 (+) ENTREZGENE MGSCv37 19 32,463,706 - 32,465,674 (+) RGD Celera 19 33,169,462 - 33,171,429 (+) RGD cM Map 19 ENTREZGENE
Sequence:
CGGGGTGCGGGTCGCCGGCAGATCTCCAGCTCGGGCAGTGGAACCCGGTACCAGGACGGTGATCTCGCGGCAGAGACAGCAGCCTCCAGTAGCTCCGGCCTTCTGGGCCGACCGCTCGTACCACCGTG
hide sequence
RGD ID: 15095057 Promoter ID: EPDNEWNC_M2976 Type: single initiation site Name: 2700046G09Rik_1 Description: RIKEN cDNA 2700046G09 gene [Source:MGISymbol;Acc:MGI:1914438] SO ACC ID: SO:0000170 Source: EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Mouse Assembly Chr Position (strand) Source GRCm38 19 32,389,235 - 32,389,295 EPDNEWNC
RGD ID: 13679264 Promoter ID: EPDNEW_M23782 Type: multiple initiation site Name: 2700046G09Rik_1 Description: Mus musculus RIKEN cDNA 2700046G09 gene , long non-coding RNA. SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Mouse Assembly Chr Position (strand) Source GRCm38 19 32,389,235 - 32,389,295 EPDNEW
RGD ID: 6847633 Promoter ID: MM_ACW:26573 Type: CpG-Island SO ACC ID: SO:0000170 Source: MPROMDB Tissues & Cell Lines: BoneMarrow_0Hour, Lung Transcripts: 2700046G09RIK.CSEP07, SWEEFU.ASEP07-UNSPLICED Position: Mouse Assembly Chr Position (strand) Source MGSCv36 19 32,461,909 - 32,462,409 (+) MPROMDB
RGD ID: 6829672 Promoter ID: MM_KWN:26854 Type: CpG-Island SO ACC ID: SO:0000170 Source: MPROMDB Tissues & Cell Lines: 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_4Hour, Brain, Kidney, MEF_B4 Transcripts: NR_033198 Position: Mouse Assembly Chr Position (strand) Source MGSCv36 19 32,463,201 - 32,463,857 (+) MPROMDB
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2022-12-19
Sgms1os1
Sgms1 opposite strand transcript 1
2700046G09Rik
RIKEN cDNA 2700046G09 gene
Symbol and/or name updated
27372883 PROVISIONAL
