Gm10377 (predicted gene 10377) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm10377 (predicted gene 10377) Mus musculus
Analyze
No known orthologs.
Symbol: Gm10377
Name: predicted gene 10377
RGD ID: 2314130
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000072606; hypothetical protein LOC100042055; uncharacterized protein LOC100042055
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391442,614,525 - 42,619,892 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1442,614,525 - 42,619,944 (-)EnsemblGRCm39 Ensembl
GRCm381442,792,568 - 42,797,935 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1442,792,568 - 42,797,987 (-)EnsemblGRCm38mm10GRCm38
MGSCv371443,371,375 - 43,376,736 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361443,371,373 - 43,376,794 (-)NCBIMGSCv36mm8
Cytogenetic Map14BNCBI
cM Map1422.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm10377Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm10377Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm10377Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932  



.

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:75
Interacting mature miRNAs:77
Transcripts:ENSMUST00000100695
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse

1 to 10 of 22 rows





RefSeq Transcripts NM_001244671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000100695   ⟹   ENSMUSP00000098260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1442,614,525 - 42,619,944 (-)Ensembl
GRCm38.p6 Ensembl1442,792,568 - 42,797,987 (-)Ensembl
RefSeq Acc Id: NM_001244671   ⟹   NP_001231600
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391442,614,525 - 42,619,892 (-)NCBI
GRCm381442,792,568 - 42,797,935 (-)NCBI
cM Map14 ENTREZGENE
Sequence:
Protein RefSeqs NP_001231600 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000098260
  ENSMUSP00000098260.4
  ENSMUSP00000128599.2
RefSeq Acc Id: NP_001231600   ⟸   NM_001244671
- UniProtKB: D3YXI8 (UniProtKB/TrEMBL),   L7N292 (UniProtKB/TrEMBL),   Q6P8U7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000098260   ⟸   ENSMUST00000100695
Disks large homolog 5 N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-D3YXI8-F1-model_v2 AlphaFold D3YXI8 1-184 view protein structure



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000072605 UniProtKB/TrEMBL
  ENSMUSG00000095226 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000100695 ENTREZGENE
  ENSMUST00000100695.4 UniProtKB/TrEMBL
  ENSMUST00000169756.8 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
KEGG Report mmu:100042055 UniProtKB/TrEMBL
MGD MGI:3704431 ENTREZGENE
NCBI Gene 100042055 ENTREZGENE
PANTHER ENSMUSG00000072602 PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam DUF622 UniProtKB/TrEMBL
PhenoGen Gm10377 PhenoGen
UniProt D3YXI8 ENTREZGENE, UniProtKB/TrEMBL
  L7N292 ENTREZGENE
  Q6P8U7 ENTREZGENE
1 to 16 of 16 rows