MIR2113 (microRNA 2113) - Rat Genome Database

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Gene: MIR2113 (microRNA 2113) Homo sapiens
Analyze
Symbol: MIR2113
Name: microRNA 2113
RGD ID: 2312959
HGNC Page HGNC:37058
Description: Located in extracellular vesicle.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: hsa-mir-2113
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38698,024,531 - 98,024,621 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl698,024,531 - 98,024,621 (+)EnsemblGRCh38hg38GRCh38
GRCh37698,472,407 - 98,472,497 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera699,116,575 - 99,116,665 (+)NCBICelera
Cytogenetic Map6q16.1NCBI
HuRef695,909,468 - 95,909,558 (+)NCBIHuRef
CHM1_1698,735,306 - 98,735,396 (+)NCBICHM1_1
T2T-CHM13v2.0699,198,717 - 99,198,807 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR2113Human2-hydroxypropanoic acid increases expressionEXP 6480464Lactic Acid results in increased expression of MIR2113 mRNACTDPMID:30851411
MIR2113Humanrac-lactic acid increases expressionEXP 6480464Lactic Acid results in increased expression of MIR2113 mRNACTDPMID:30851411


Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR2113Humanextracellular vesicle located_inHDA 150520179 PMID:28798470ARUK-UCLPMID:28798470

PMID:16381832   PMID:16954537   PMID:19015728   PMID:23648065   PMID:24618891   PMID:25644384   PMID:28067462   PMID:28798470   PMID:31975383   PMID:32931917  



.

Predicted Targets
Summary Value
Count of predictions:14594
Count of gene targets:6383
Count of transcripts:11496
Interacting mature miRNAs:hsa-miR-2113
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298426BFD3_HBody fluid distribution QTL 3 (human)2.790.01Body fluid distributionimpedance ratio684873647110873647Human




alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
entire extraembryonic component
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
1 21 2 6 1 3 1 13 6 4 1 8 1 5 5


RefSeq Transcripts NR_031579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL590239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000459007
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl698,024,531 - 98,024,621 (+)Ensembl
RefSeq Acc Id: NR_031579
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38698,024,531 - 98,024,621 (+)NCBI
GRCh37698,472,407 - 98,472,497 (+)RGD
Celera699,116,575 - 99,116,665 (+)RGD
HuRef695,909,468 - 95,909,558 (+)ENTREZGENE
CHM1_1698,735,306 - 98,735,396 (+)NCBI
T2T-CHM13v2.0699,198,717 - 99,198,807 (+)NCBI
Sequence:


1 to 11 of 11 rows
Database
Acc Id
Source(s)
COSMIC MIR2113 COSMIC
Ensembl Genes ENSG00000238367 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000459007 ENTREZGENE
GTEx ENSG00000238367 GTEx
HGNC ID HGNC:37058 ENTREZGENE
Human Proteome Map MIR2113 Human Proteome Map
miRBase MI0003939 ENTREZGENE
NCBI Gene 100302164 ENTREZGENE
PharmGKB PA164722594 PharmGKB
RNAcentral URS000075C7E0 RNACentral
  URS000075DC36 RNACentral
1 to 11 of 11 rows