Gm5402 (predicted gene 5402) - Rat Genome Database

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Gene: Gm5402 (predicted gene 5402) Mus musculus
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Symbol: Gm5402
Name: predicted gene 5402
RGD ID: 2311943
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG385500
Related Functional Gene: Senp2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X93,715,106 - 93,716,736 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX93,715,109 - 93,716,726 (-)EnsemblGRCm39 Ensembl
GRCm38X94,671,500 - 94,673,130 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX94,671,503 - 94,673,120 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X91,916,839 - 91,918,469 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X90,924,216 - 90,965,878 (-)NCBIMGSCv36mm8
CeleraX81,599,032 - 81,600,662 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.65NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm5402
32 total Variants

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:128
Interacting mature miRNAs:128
Transcripts:ENSMUST00000119588
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse

1 to 10 of 10 rows
DXMit113  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X94,700,904 - 94,700,997UniSTSGRCm38
GRCm38X94,833,381 - 94,833,476UniSTSGRCm38
MGSCv37X91,946,243 - 91,946,336UniSTSGRCm37
MGSCv37X92,078,720 - 92,078,815UniSTSGRCm37
CeleraX81,628,350 - 81,628,443UniSTS
Cytogenetic MapXC3UniSTS
cM MapX37.0UniSTS
cM MapX UniSTS
Whitehead GeneticX27.3UniSTS
Whitehead/MRC_RHX1063.19UniSTS
Whitehead_YACX UniSTS







Ensembl Acc Id: ENSMUST00000119588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX93,715,109 - 93,716,726 (-)Ensembl
GRCm38.p6 EnsemblX94,671,503 - 94,673,120 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000083438 Ensembl, ENTREZGENE
MGD MGI:3644522 ENTREZGENE
NCBI Gene 385500 ENTREZGENE
PhenoGen Gm5402 PhenoGen