Senp2 (SUMO/sentrin specific peptidase 2) - Rat Genome Database

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Gene: Senp2 (SUMO/sentrin specific peptidase 2) Mus musculus
Analyze
Symbol: Senp2
Name: SUMO/sentrin specific peptidase 2
RGD ID: 733308
MGI Page MGI
Description: Enables deSUMOylase activity. Involved in fat cell differentiation and protein desumoylation. Acts upstream of or within several processes, including embryonic placenta development; positive regulation of transcription by RNA polymerase II; and regulation of cell cycle process. Located in nuclear body. Colocalizes with PML body. Is expressed in several structures, including blastocyst; central nervous system; early embryo; extraembryonic component; and retina. Orthologous to human SENP2 (SUMO specific peptidase 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310007L05Rik; 4930538C18Rik; AI646780; AW554757; axam2; KIAA1331; mKIAA1331; sentrin-specific protease 2; sentrin/SUMO-specific protease SENP2; Smt3ip2; SUMO-1 protease 1; SUMO-1 protease-1; SUMO-1/Smt3-specific isopeptidase 2; SUMO/sentrin specific protease 2; SuPr-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm5402  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391621,828,182 - 21,868,019 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1621,828,234 - 21,868,019 (+)EnsemblGRCm39 Ensembl
GRCm381622,009,432 - 22,049,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1622,009,484 - 22,049,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv371622,009,557 - 22,049,342 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361621,924,664 - 21,963,132 (+)NCBIMGSCv36mm8
Celera1622,576,818 - 22,616,603 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)
cytoplasmic vesicle  (IDA)
cytosol  (ISO)
membrane  (IEA)
nuclear body  (IDA)
nuclear pore  (ISO)
nucleus  (IBA,IDA)
PML body  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11489887   PMID:12419228   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15767674   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:17967808   PMID:17981124   PMID:18799693   PMID:19090619   PMID:19515997   PMID:20194620   PMID:20417598   PMID:20950277   PMID:21183956   PMID:21554500  
PMID:21873635   PMID:22028379   PMID:22155005   PMID:23381569   PMID:23691130   PMID:24344126   PMID:25189211   PMID:25299344   PMID:26142281   PMID:26883797   PMID:27717094   PMID:28965824  
PMID:29272473   PMID:29535048   PMID:30902749   PMID:31433978   PMID:31625212   PMID:32290845   PMID:32325033   PMID:32554809   PMID:33182061   PMID:33211757   PMID:33934381   PMID:34465891  
PMID:34509475   PMID:34628513   PMID:34971706   PMID:35196497   PMID:36543805   PMID:36872063   PMID:37301920   PMID:37462038  


Genomics

Comparative Map Data
Senp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391621,828,182 - 21,868,019 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1621,828,234 - 21,868,019 (+)EnsemblGRCm39 Ensembl
GRCm381622,009,432 - 22,049,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1622,009,484 - 22,049,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv371622,009,557 - 22,049,342 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361621,924,664 - 21,963,132 (+)NCBIMGSCv36mm8
Celera1622,576,818 - 22,616,603 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.98NCBI
SENP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383185,586,295 - 185,633,551 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3185,582,496 - 185,633,551 (+)EnsemblGRCh38hg38GRCh38
GRCh373185,304,083 - 185,351,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363186,786,725 - 186,831,583 (+)NCBINCBI36Build 36hg18NCBI36
Build 343186,786,732 - 186,831,585NCBI
Celera3183,741,683 - 183,786,630 (+)NCBICelera
Cytogenetic Map3q27.2NCBI
HuRef3182,713,166 - 182,758,813 (+)NCBIHuRef
CHM1_13185,267,116 - 185,311,866 (+)NCBICHM1_1
T2T-CHM13v2.03188,402,099 - 188,449,380 (+)NCBIT2T-CHM13v2.0
Senp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21178,981,429 - 79,018,274 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1178,981,432 - 79,018,238 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1187,718,539 - 87,752,630 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01180,372,185 - 80,406,276 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01179,432,886 - 79,466,977 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01182,627,973 - 82,664,702 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1182,630,436 - 82,664,630 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01185,721,099 - 85,755,217 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41181,225,720 - 81,259,934 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11181,283,308 - 81,317,523 (-)NCBI
Celera1177,846,354 - 77,880,450 (-)NCBICelera
Cytogenetic Map11q23NCBI
Senp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542021,969,537 - 22,005,856 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542021,969,537 - 22,005,094 (-)NCBIChiLan1.0ChiLan1.0
SENP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan13183,452,388 - 183,503,495 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03182,606,922 - 182,655,518 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13191,083,159 - 191,129,572 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3191,086,488 - 191,129,572 (+)Ensemblpanpan1.1panPan2
SENP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13418,325,373 - 18,357,152 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3418,325,553 - 18,356,192 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3422,411,070 - 22,442,872 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03418,235,175 - 18,266,937 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3418,235,165 - 18,266,935 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13418,270,590 - 18,302,404 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03418,266,749 - 18,298,733 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03418,496,165 - 18,528,163 (+)NCBIUU_Cfam_GSD_1.0
Senp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602118,160,861 - 118,198,599 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365784,248,244 - 4,290,418 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365784,252,718 - 4,290,452 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SENP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13123,429,995 - 123,471,926 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113123,429,915 - 123,469,913 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213132,967,994 - 133,007,559 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SENP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1153,805,916 - 3,853,529 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606312,558,692 - 12,605,920 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Senp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473071,068,112 - 71,100,225 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473071,068,112 - 71,100,121 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Senp2
1283 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:976
Count of miRNA genes:557
Interacting mature miRNAs:702
Transcripts:ENSMUST00000023561
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
11565820Vasr1_mvariability in acoustic startle response 1 (mouse)161969865726368664Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse

Markers in Region
AI646780  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381622,047,525 - 22,047,642UniSTSGRCm38
MGSCv371622,047,598 - 22,047,715UniSTSGRCm37
Celera1622,614,859 - 22,614,976UniSTS
Cytogenetic Map16B1UniSTS
Whitehead/MRC_RH16184.43UniSTS
AW554757  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381622,047,308 - 22,047,442UniSTSGRCm38
GRCm38X94,670,748 - 94,670,877UniSTSGRCm38
MGSCv371622,047,381 - 22,047,515UniSTSGRCm37
MGSCv37X91,916,087 - 91,916,216UniSTSGRCm37
Celera1622,614,642 - 22,614,776UniSTS
CeleraX81,598,280 - 81,598,409UniSTS
Cytogenetic Map16B1UniSTS
Whitehead/MRC_RH16186.8UniSTS
px-44d3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9CUniSTS
Cytogenetic Map16B1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_027488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006522688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006522689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF368904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY188288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ169147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT030725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000023561   ⟹   ENSMUSP00000023561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1621,828,234 - 21,868,019 (+)Ensembl
GRCm38.p6 Ensembl1622,009,484 - 22,049,269 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1621,828,285 - 21,829,889 (+)Ensembl
GRCm38.p6 Ensembl1622,009,535 - 22,011,139 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231632   ⟹   ENSMUSP00000156157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1621,828,549 - 21,829,137 (+)Ensembl
GRCm38.p6 Ensembl1622,009,799 - 22,010,387 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231724   ⟹   ENSMUSP00000156004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1621,828,262 - 21,865,616 (+)Ensembl
GRCm38.p6 Ensembl1622,009,512 - 22,046,866 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231798   ⟹   ENSMUSP00000156045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1621,828,403 - 21,866,631 (+)Ensembl
GRCm38.p6 Ensembl1622,009,653 - 22,047,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232263   ⟹   ENSMUSP00000156054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1621,847,309 - 21,867,278 (+)Ensembl
GRCm38.p6 Ensembl1622,028,559 - 22,048,528 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232534   ⟹   ENSMUSP00000155909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1621,828,553 - 21,842,559 (+)Ensembl
GRCm38.p6 Ensembl1622,009,803 - 22,023,809 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232679   ⟹   ENSMUSP00000156326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1621,828,311 - 21,865,903 (+)Ensembl
GRCm38.p6 Ensembl1622,009,561 - 22,047,153 (+)Ensembl
RefSeq Acc Id: NM_001357424   ⟹   NP_001344353
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391621,828,234 - 21,868,019 (+)NCBI
GRCm381622,009,484 - 22,049,269 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029457   ⟹   NP_083733
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391621,828,234 - 21,868,019 (+)NCBI
GRCm381622,009,484 - 22,049,269 (+)NCBI
MGSCv371622,009,557 - 22,049,342 (+)RGD
Celera1622,576,818 - 22,616,603 (+)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_027488
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391621,828,234 - 21,868,019 (+)NCBI
GRCm381622,009,484 - 22,049,269 (+)NCBI
MGSCv371622,009,557 - 22,049,342 (+)RGD
Celera1622,576,818 - 22,616,603 (+)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006522688   ⟹   XP_006522751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391621,828,182 - 21,867,993 (+)NCBI
GRCm381622,009,432 - 22,049,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006522689   ⟹   XP_006522752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391621,828,262 - 21,867,993 (+)NCBI
GRCm381622,009,517 - 22,049,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249323   ⟹   XP_030105183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391621,828,516 - 21,867,993 (+)NCBI
GRCm381622,009,765 - 22,049,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249324   ⟹   XP_030105184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391621,828,266 - 21,867,993 (+)NCBI
GRCm381622,009,604 - 22,049,243 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003951844
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391621,828,182 - 21,867,991 (+)NCBI
GRCm381622,009,432 - 22,047,878 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_083733   ⟸   NM_029457
- Peptide Label: isoform 1
- UniProtKB: Q811R3 (UniProtKB/Swiss-Prot),   Q544T8 (UniProtKB/Swiss-Prot),   Q9D4Z0 (UniProtKB/Swiss-Prot),   Q91ZX6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006522751   ⟸   XM_006522688
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006522752   ⟸   XM_006522689
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001344353   ⟸   NM_001357424
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030105184   ⟸   XM_030249324
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030105183   ⟸   XM_030249323
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000156004   ⟸   ENSMUST00000231724
RefSeq Acc Id: ENSMUSP00000156045   ⟸   ENSMUST00000231798
RefSeq Acc Id: ENSMUSP00000156157   ⟸   ENSMUST00000231632
RefSeq Acc Id: ENSMUSP00000156054   ⟸   ENSMUST00000232263
RefSeq Acc Id: ENSMUSP00000156326   ⟸   ENSMUST00000232679
RefSeq Acc Id: ENSMUSP00000155909   ⟸   ENSMUST00000232534
RefSeq Acc Id: ENSMUSP00000023561   ⟸   ENSMUST00000023561

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91ZX6-F1-model_v2 AlphaFold Q91ZX6 1-588 view protein structure

Promoters
RGD ID:6827492
Promoter ID:MM_KWN:20535
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_029457,   NR_027488_SENP2
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361622,009,151 - 22,009,797 (+)MPROMDB
RGD ID:8685796
Promoter ID:EPDNEW_M20928
Type:initiation region
Name:Senp2_1
Description:Mus musculus SUMO/sentrin specific peptidase 2 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381622,009,541 - 22,009,601EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923076 AgrOrtholog
Ensembl Genes ENSMUSG00000022855 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023561 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000231632.2 UniProtKB/TrEMBL
  ENSMUST00000231724.2 UniProtKB/TrEMBL
  ENSMUST00000231798.2 UniProtKB/TrEMBL
  ENSMUST00000232263.2 UniProtKB/TrEMBL
  ENSMUST00000232534.2 UniProtKB/TrEMBL
  ENSMUST00000232679.2 UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot
  Peptidase_C48_C UniProtKB/Swiss-Prot
KEGG Report mmu:75826 UniProtKB/Swiss-Prot
MGD MGI:1923076 ENTREZGENE
NCBI Gene 75826 ENTREZGENE
PANTHER SENTRIN-SPECIFIC PROTEASE 2 UniProtKB/Swiss-Prot
  SENTRIN/SUMO-SPECIFIC PROTEASE UniProtKB/Swiss-Prot
Pfam Peptidase_C48 UniProtKB/Swiss-Prot
PhenoGen Senp2 PhenoGen
PROSITE ULP_PROTEASE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot
UniProt A0A338P6A3_MOUSE UniProtKB/TrEMBL
  A0A338P6J8_MOUSE UniProtKB/TrEMBL
  A0A338P6M2_MOUSE UniProtKB/TrEMBL
  A0A338P6Y3_MOUSE UniProtKB/TrEMBL
  A0A338P710_MOUSE UniProtKB/TrEMBL
  A0A338P790_MOUSE UniProtKB/TrEMBL
  Q544T8 ENTREZGENE
  Q811R3 ENTREZGENE
  Q91ZX6 ENTREZGENE
  Q9D4Z0 ENTREZGENE
  SENP2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q544T8 UniProtKB/Swiss-Prot
  Q811R3 UniProtKB/Swiss-Prot
  Q9D4Z0 UniProtKB/Swiss-Prot