Rpl31-ps4 (ribosomal protein L31, pseudogene 4) - Rat Genome Database

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Gene: Rpl31-ps4 (ribosomal protein L31, pseudogene 4) Mus musculus
Analyze
Symbol: Rpl31-ps4
Name: ribosomal protein L31, pseudogene 4
RGD ID: 2310154
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG435486; Gm5677
Related Functional Gene: Rpl31  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391687,345,929 - 87,346,355 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1687,345,950 - 87,346,339 (-)EnsemblGRCm39 Ensembl
GRCm381687,549,041 - 87,549,467 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1687,549,062 - 87,549,451 (-)EnsemblGRCm38mm10GRCm38
MGSCv371687,549,286 - 87,549,712 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361687,438,271 - 87,438,647 (-)NCBIMGSCv36mm8
Celera1687,743,442 - 87,743,868 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1649.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Rpl31-ps4
17 total Variants

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:87
Interacting mature miRNAs:90
Transcripts:ENSMUST00000079114
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse

1 to 10 of 15 rows





RefSeq Transcripts NG_012591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000079114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1687,345,950 - 87,346,339 (-)Ensembl
GRCm38.p6 Ensembl1687,549,062 - 87,549,451 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000090753 Ensembl, ENTREZGENE
MGD MGI:3649126 ENTREZGENE
NCBI Gene 435486 ENTREZGENE
PhenoGen Rpl31-ps4 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-04-03 Rpl31-ps4  ribosomal protein L31, pseudogene 4  Rpl31-ps4  ribosomal protein L31-ps4  Symbol and/or name change 5135510 APPROVED
2011-07-27 Rpl31-ps4  ribosomal protein L31-ps4  Gm5677  predicted gene 5677  Symbol and/or name change 5135510 APPROVED