Gm2694 (predicted gene 2694) - Rat Genome Database
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Gene: Gm2694 (predicted gene 2694) Mus musculus
Analyze
Symbol: Gm2694
Name: predicted gene 2694
RGD ID: 2308226
MGI Page MGI
Description: Is expressed in central nervous system and vibrissa.
Type: ncrna
RefSeq Status: VALIDATED
Also known as: 100040294; C230036H16Rik; linc1582; RIKEN cDNA C230036H16 gene
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39888,199,440 - 88,252,182 (+)NCBIGRCm39mm39
GRCm38887,472,812 - 87,525,554 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl887,460,469 - 87,525,554 (+)EnsemblGRCm38mm10GRCm38
MGSCv37889,996,711 - 90,049,453 (+)NCBIGRCm37mm9NCBIm37
MGSCv36889,996,637 - 90,045,676 (+)NCBImm8
Celera891,786,937 - 91,790,728 (+)NCBICelera
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:20436462   PMID:21267068   PMID:21874018   PMID:24200680  
PMID:24316575   PMID:27899360  


Genomics

Position Markers
RH142530  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38887,470,927 - 87,471,085UniSTSGRCm38
MGSCv37889,994,826 - 89,994,984UniSTSGRCm37
Celera891,735,862 - 91,736,020UniSTS
Cytogenetic Map8C3UniSTS
cM Map840.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined885716921119717069Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined885716921119717069Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined885716921119717069Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:995
Count of miRNA genes:342
Interacting mature miRNAs:375
Transcripts:ENSMUST00000180700, ENSMUST00000180806, ENSMUST00000181159, ENSMUST00000182174, ENSMUST00000182650, ENSMUST00000182758
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000180700
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,472,812 - 87,523,900 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180806
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,472,844 - 87,525,552 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181159
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,472,812 - 87,525,554 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181898
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,473,157 - 87,503,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182174
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,472,812 - 87,525,553 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182650
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,473,116 - 87,525,008 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182758
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,473,134 - 87,525,554 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,502,912 - 87,521,799 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210935
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,460,469 - 87,525,552 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211487
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,473,394 - 87,525,550 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211631
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,473,134 - 87,525,552 (+)Ensembl
RefSeq Acc Id: NR_033430
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39888,199,440 - 88,252,182 (+)NCBI
GRCm38887,472,812 - 87,525,554 (+)ENTREZGENE
MGSCv37889,996,711 - 90,049,453 (+)RGD
Celera891,786,936 - 91,790,728 (+)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_125722
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39888,199,744 - 88,252,180 (+)NCBI
GRCm38887,473,116 - 87,525,552 (+)NCBI
Celera891,786,936 - 91,790,728 (+)NCBI
Sequence:
Promoters
RGD ID:8667793
Promoter ID:EPDNEW_M11928
Type:initiation region
Name:Gm2694_1
Description:Mus musculus predicted gene 2694 , transcript variant 2, longnon-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11929  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38887,472,815 - 87,472,875EPDNEW
RGD ID:15093488
Promoter ID:EPDNEWNC_M1392
Type:multiple initiation site
Name:Gm2694_1
Description:predicted gene 2694 [Source:MGI Symbol;Acc:MGI:3780864]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38887,472,815 - 87,472,875EPDNEWNC
RGD ID:8667795
Promoter ID:EPDNEW_M11929
Type:initiation region
Name:Gm2694_2
Description:Mus musculus predicted gene 2694 , transcript variant 2, longnon-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11928  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38887,473,194 - 87,473,254EPDNEW
RGD ID:6842897
Promoter ID:MM_KWN:55188
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_019626,   UC009MQQ.1,   UC009MQS.1,   XM_001474448_GM2694
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36889,996,611 - 89,997,262 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097248 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181159 ENTREZGENE
  ENSMUST00000182758 ENTREZGENE
MGD MGI:3780864 ENTREZGENE
NCBI Gene 100040294 ENTREZGENE
PhenoGen Gm2694 PhenoGen
RNAcentral URS000075B339 RNACentral
  URS00007E35A3 RNACentral
UniGene Mm.213632 ENTREZGENE
  Mm.405597 ENTREZGENE
  Mm.488771 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Gm2694  predicted gene 2694  C230036H16Rik  RIKEN cDNA C230036H16 gene  Data Merged 737654 PROVISIONAL