Alyreffm12 (Aly/REF export factor family member 12) - Rat Genome Database

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Gene: Alyreffm12 (Aly/REF export factor family member 12) Mus musculus
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Symbol: Alyreffm12
Name: Aly/REF export factor family member 12
RGD ID: 2307867
MGI Page MGI
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 100043242; Gm4308
Related Functional Gene: Alyref  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910100,202,391 - 100,203,035 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10100,202,391 - 100,203,251 (+)EnsemblGRCm39 Ensembl
GRCm3810100,366,529 - 100,367,173 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10100,366,499 - 100,367,412 (+)EnsemblGRCm38mm10GRCm38
MGSCv371099,829,163 - 99,829,807 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361099,828,150 - 99,830,023 (+)NCBIMGSCv36mm8
Cytogenetic Map10D1NCBI
cM Map1051.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Alyreffm12
24 total Variants

1 to 10 of 61 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1302162Ednrbm1_mendothelin receptor type B modifier 1 (mouse)Not determined1092127383103713756Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse

1 to 10 of 61 rows





RefSeq Transcripts NG_018922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC164629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000179735
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10100,202,391 - 100,203,251 (+)Ensembl
GRCm38.p6 Ensembl10100,366,499 - 100,367,412 (+)Ensembl
Ensembl Protein ENSMUSP00000139588.4
  ENSMUSP00000140999.4
  ENSMUSP00000159555.1
RRM



1 to 21 of 21 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000094314 UniProtKB/TrEMBL
  ENSMUSG00000095673 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000096640 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000179735.3 UniProtKB/TrEMBL
  ENSMUST00000186197.5 UniProtKB/TrEMBL
  ENSMUST00000190264.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro ALYREF_mRNA_export UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
MGD MGI:3782489 ENTREZGENE
NCBI Gene 100043242 ENTREZGENE
PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN UniProtKB/TrEMBL
  THO COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PhenoGen Alyreffm12 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP RNA-binding domain, RBD UniProtKB/TrEMBL
UniProt K9J7E2_MOUSE UniProtKB/TrEMBL
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-04 Alyreffm12  Aly/REF export factor family member 12  Gm4308  predicted gene 4308  Symbol and/or name updated 27372883 PROVISIONAL