Gm6649 (predicted gene 6649) - Rat Genome Database

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Gene: Gm6649 (predicted gene 6649) Mus musculus
Analyze
Symbol: Gm6649
Name: predicted gene 6649
RGD ID: 2307685
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 2610034N15Rik; AI467242
Related Functional Gene: Elf1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393115,736,752 - 115,737,913 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3115,736,746 - 115,737,910 (+)EnsemblGRCm39 Ensembl
GRCm383115,943,103 - 115,944,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3115,943,097 - 115,944,261 (+)EnsemblGRCm38mm10GRCm38
MGSCv373115,643,455 - 115,647,675 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363115,932,541 - 115,936,761 (+)NCBIMGSCv36mm8
Celera3122,365,114 - 122,369,183 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm6649
45 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse

Markers in Region
UniSTS:234809  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383115,939,039 - 115,939,300UniSTSGRCm38
MGSCv373115,641,957 - 115,642,218UniSTSGRCm37
Celera3122,363,616 - 122,363,877UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map3G2UniSTS
AI467242  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383115,941,648 - 115,941,735UniSTSGRCm38
MGSCv373115,644,566 - 115,644,653UniSTSGRCm37
Celera3122,366,225 - 122,366,312UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map3G1UniSTS
Whitehead/MRC_RH31355.28UniSTS
BE115199  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383115,941,430 - 115,941,593UniSTSGRCm38
MGSCv373115,644,348 - 115,644,511UniSTSGRCm37
Celera3122,366,007 - 122,366,170UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map3G2UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000199743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3115,736,746 - 115,737,910 (+)Ensembl
GRCm38.p6 Ensembl3115,943,097 - 115,944,261 (+)Ensembl
RefSeq Acc Id: NR_030739
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv373115,643,455 - 115,647,675 (+)RGD
Celera3122,365,114 - 122,369,183 (+)RGD
Promoters
RGD ID:6833190
Promoter ID:MM_KWN:35881
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Lung,   MEF_B6,   Spleen
Transcripts:AK076492_4833428C12RIK,   NR_030739
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363115,640,906 - 115,644,637 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000105645 Ensembl, ENTREZGENE
MGD MGI:3779621 ENTREZGENE
NCBI Gene 626061 ENTREZGENE
PhenoGen Gm6649 PhenoGen